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Bayesian estimation of predator diet composition from fatty acids and stable isotopes
Quantitative analysis of stable isotopes (SI) and, more recently, fatty acid profiles (FAP) are useful and complementary tools for estimating the relative contribution of different prey items in the diet of a predator. The combination of these two approaches, however, has thus far been limited and q...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4411522/ https://www.ncbi.nlm.nih.gov/pubmed/25922801 http://dx.doi.org/10.7717/peerj.920 |
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author | Neubauer, Philipp Jensen, Olaf P. |
author_facet | Neubauer, Philipp Jensen, Olaf P. |
author_sort | Neubauer, Philipp |
collection | PubMed |
description | Quantitative analysis of stable isotopes (SI) and, more recently, fatty acid profiles (FAP) are useful and complementary tools for estimating the relative contribution of different prey items in the diet of a predator. The combination of these two approaches, however, has thus far been limited and qualitative. We propose a mixing model for FAP that follows the Bayesian machinery employed in state-of-the-art mixing models for SI. This framework provides both point estimates and probability distributions for individual and population level diet proportions. Where fat content and conversion coefficients are available, they can be used to improve diet estimates. This model can be explicitly integrated with analogous models for SI to increase resolution and clarify predator–prey relationships. We apply our model to simulated data and an experimental dataset that allows us to illustrate modeling strategies and demonstrate model performance. Our methods are provided as an open source software package for the statistical computing environment R. |
format | Online Article Text |
id | pubmed-4411522 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-44115222015-04-28 Bayesian estimation of predator diet composition from fatty acids and stable isotopes Neubauer, Philipp Jensen, Olaf P. PeerJ Aquaculture, Fisheries and Fish Science Quantitative analysis of stable isotopes (SI) and, more recently, fatty acid profiles (FAP) are useful and complementary tools for estimating the relative contribution of different prey items in the diet of a predator. The combination of these two approaches, however, has thus far been limited and qualitative. We propose a mixing model for FAP that follows the Bayesian machinery employed in state-of-the-art mixing models for SI. This framework provides both point estimates and probability distributions for individual and population level diet proportions. Where fat content and conversion coefficients are available, they can be used to improve diet estimates. This model can be explicitly integrated with analogous models for SI to increase resolution and clarify predator–prey relationships. We apply our model to simulated data and an experimental dataset that allows us to illustrate modeling strategies and demonstrate model performance. Our methods are provided as an open source software package for the statistical computing environment R. PeerJ Inc. 2015-04-23 /pmc/articles/PMC4411522/ /pubmed/25922801 http://dx.doi.org/10.7717/peerj.920 Text en © 2015 Neubauer and Jensen http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Aquaculture, Fisheries and Fish Science Neubauer, Philipp Jensen, Olaf P. Bayesian estimation of predator diet composition from fatty acids and stable isotopes |
title | Bayesian estimation of predator diet composition from fatty acids and stable isotopes |
title_full | Bayesian estimation of predator diet composition from fatty acids and stable isotopes |
title_fullStr | Bayesian estimation of predator diet composition from fatty acids and stable isotopes |
title_full_unstemmed | Bayesian estimation of predator diet composition from fatty acids and stable isotopes |
title_short | Bayesian estimation of predator diet composition from fatty acids and stable isotopes |
title_sort | bayesian estimation of predator diet composition from fatty acids and stable isotopes |
topic | Aquaculture, Fisheries and Fish Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4411522/ https://www.ncbi.nlm.nih.gov/pubmed/25922801 http://dx.doi.org/10.7717/peerj.920 |
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