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Bayesian estimation of predator diet composition from fatty acids and stable isotopes

Quantitative analysis of stable isotopes (SI) and, more recently, fatty acid profiles (FAP) are useful and complementary tools for estimating the relative contribution of different prey items in the diet of a predator. The combination of these two approaches, however, has thus far been limited and q...

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Autores principales: Neubauer, Philipp, Jensen, Olaf P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4411522/
https://www.ncbi.nlm.nih.gov/pubmed/25922801
http://dx.doi.org/10.7717/peerj.920
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author Neubauer, Philipp
Jensen, Olaf P.
author_facet Neubauer, Philipp
Jensen, Olaf P.
author_sort Neubauer, Philipp
collection PubMed
description Quantitative analysis of stable isotopes (SI) and, more recently, fatty acid profiles (FAP) are useful and complementary tools for estimating the relative contribution of different prey items in the diet of a predator. The combination of these two approaches, however, has thus far been limited and qualitative. We propose a mixing model for FAP that follows the Bayesian machinery employed in state-of-the-art mixing models for SI. This framework provides both point estimates and probability distributions for individual and population level diet proportions. Where fat content and conversion coefficients are available, they can be used to improve diet estimates. This model can be explicitly integrated with analogous models for SI to increase resolution and clarify predator–prey relationships. We apply our model to simulated data and an experimental dataset that allows us to illustrate modeling strategies and demonstrate model performance. Our methods are provided as an open source software package for the statistical computing environment R.
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spelling pubmed-44115222015-04-28 Bayesian estimation of predator diet composition from fatty acids and stable isotopes Neubauer, Philipp Jensen, Olaf P. PeerJ Aquaculture, Fisheries and Fish Science Quantitative analysis of stable isotopes (SI) and, more recently, fatty acid profiles (FAP) are useful and complementary tools for estimating the relative contribution of different prey items in the diet of a predator. The combination of these two approaches, however, has thus far been limited and qualitative. We propose a mixing model for FAP that follows the Bayesian machinery employed in state-of-the-art mixing models for SI. This framework provides both point estimates and probability distributions for individual and population level diet proportions. Where fat content and conversion coefficients are available, they can be used to improve diet estimates. This model can be explicitly integrated with analogous models for SI to increase resolution and clarify predator–prey relationships. We apply our model to simulated data and an experimental dataset that allows us to illustrate modeling strategies and demonstrate model performance. Our methods are provided as an open source software package for the statistical computing environment R. PeerJ Inc. 2015-04-23 /pmc/articles/PMC4411522/ /pubmed/25922801 http://dx.doi.org/10.7717/peerj.920 Text en © 2015 Neubauer and Jensen http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Aquaculture, Fisheries and Fish Science
Neubauer, Philipp
Jensen, Olaf P.
Bayesian estimation of predator diet composition from fatty acids and stable isotopes
title Bayesian estimation of predator diet composition from fatty acids and stable isotopes
title_full Bayesian estimation of predator diet composition from fatty acids and stable isotopes
title_fullStr Bayesian estimation of predator diet composition from fatty acids and stable isotopes
title_full_unstemmed Bayesian estimation of predator diet composition from fatty acids and stable isotopes
title_short Bayesian estimation of predator diet composition from fatty acids and stable isotopes
title_sort bayesian estimation of predator diet composition from fatty acids and stable isotopes
topic Aquaculture, Fisheries and Fish Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4411522/
https://www.ncbi.nlm.nih.gov/pubmed/25922801
http://dx.doi.org/10.7717/peerj.920
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