Cargando…

Computational algorithms to predict Gene Ontology annotations

BACKGROUND: Gene function annotations, which are associations between a gene and a term of a controlled vocabulary describing gene functional features, are of paramount importance in modern biology. Datasets of these annotations, such as the ones provided by the Gene Ontology Consortium, are used to...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pinoli, Pietro, Chicco, Davide, Masseroli, Marco
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416163/ https://www.ncbi.nlm.nih.gov/pubmed/25916950 http://dx.doi.org/10.1186/1471-2105-16-S6-S4

Ejemplares similares

Quality of Computationally Inferred Gene Ontology Annotations
por: Škunca, Nives, et al.
Publicado: (2012)

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL
por: Jupp, Simon, et al.
Publicado: (2012)

Automated Ontological Gene Annotation for Computing Disease Similarity
por: Mathur, Sachin, et al.
Publicado: (2010)

Detection of gene annotations and protein-protein interaction associated disorders through transitive relationships between integrated annotations
por: Masseroli, Marco, et al.
Publicado: (2015)

Annotating the Function of the Human Genome with Gene Ontology and Disease Ontology
por: Hu, Yang, et al.
Publicado: (2016)

On gene ontology and function annotation
por: Pal, Debnath
Publicado: (2006)

Gene Ontology Annotations and Resources
Publicado: (2013)

Statistical algorithms for ontology-based annotation of scientific literature
por: Chakrabarti, Chayan, et al.
Publicado: (2014)

Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study
por: Costanzo, Maria C., et al.
Publicado: (2011)

Graph embeddings on gene ontology annotations for protein–protein interaction prediction
por: Zhong, Xiaoshi, et al.
Publicado: (2020)

Exploiting ontology graph for predicting sparsely annotated gene function
por: Wang, Sheng, et al.
Publicado: (2015)

Benchmarking gene ontology function predictions using negative annotations
por: Warwick Vesztrocy, Alex, et al.
Publicado: (2020)

Gradient Learning Algorithms for Ontology Computing
por: Gao, Wei, et al.
Publicado: (2014)

The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources
por: Pesquita, Catia, et al.
Publicado: (2014)

Information-theoretic evaluation of predicted ontological annotations
por: Clark, Wyatt T., et al.
Publicado: (2013)

Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions
por: Kuppuswamy, Usha, et al.
Publicado: (2014)

Sequence Ontology Annotation Guide
por: Eilbeck, Karen, et al.
Publicado: (2004)

Gene Ontology Meta Annotator for Plants (GOMAP)
por: Wimalanathan, Kokulapalan, et al.
Publicado: (2021)

Gene Ontology annotations at SGD: new data sources and annotation methods
por: Hong, Eurie L., et al.
Publicado: (2008)

GFINDer: genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists
por: Masseroli, Marco, et al.
Publicado: (2005)

Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists
por: Masseroli, Marco, et al.
Publicado: (2007)

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations
por: Park, Julie, et al.
Publicado: (2012)

Variation ontology: annotator guide
por: Vihinen, Mauno
Publicado: (2014)

False positive reduction in protein-protein interaction predictions using gene ontology annotations
por: Mahdavi, Mahmoud A, et al.
Publicado: (2007)

Annotating the human genome with Disease Ontology
por: Osborne, John D, et al.
Publicado: (2009)

Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists
por: Masseroli, Marco, et al.
Publicado: (2005)

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns
por: Wood, Valerie, et al.
Publicado: (2020)

Gene Ontology annotation quality analysis in model eukaryotes
por: Buza, Teresia J., et al.
Publicado: (2008)

Amplification of the Gene Ontology annotation of Affymetrix probe sets
por: Muro, Enrique M, et al.
Publicado: (2006)

FlyBase: enhancing Drosophila Gene Ontology annotations
por: Tweedie, Susan, et al.
Publicado: (2009)

The GOA database: Gene Ontology annotation updates for 2015
por: Huntley, Rachael P., et al.
Publicado: (2014)

Evaluating Functional Annotations of Enzymes Using the Gene Ontology
por: Holliday, Gemma L., et al.
Publicado: (2017)

Phenex: Ontological Annotation of Phenotypic Diversity
por: Balhoff, James P., et al.
Publicado: (2010)

Computational prediction of diagnosis and feature selection on mesothelioma patient health records
por: Chicco, Davide, et al.
Publicado: (2019)

Prediction of yeast protein–protein interaction network: insights from the Gene Ontology and annotations
por: Wu, Xiaomei, et al.
Publicado: (2006)

Phenotype annotation with the ontology of microbial phenotypes (OMP)
por: Siegele, Deborah A., et al.
Publicado: (2019)

Cellular Functions of Genetically Imprinted Genes in Human and Mouse as Annotated in the Gene Ontology
por: Hamed, Mohamed, et al.
Publicado: (2012)

AISO: Annotation of Image Segments with Ontologies
por: Lingutla, Nikhil Tej, et al.
Publicado: (2014)

Gene Ontology annotations: what they mean and where they come from
por: Hill, David P, et al.
Publicado: (2008)

Automatic annotation of protein motif function with Gene Ontology terms
por: Lu, Xinghua, et al.
Publicado: (2004)

Cannot write session to /tmp/vufind_sessions/sess_l31svjb4ga54vibsrqtih8akmb