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Lactococcus garvieae: a small bacteria and a big data world

OBJECTIVE: To describe the importance of bioinformatics tools to analyze the big data yielded from new "omics" generation-methods, with the aim of unraveling the biology of the pathogen bacteria Lactococcus garvieae. METHODS: The paper provides the vision of the large volume of data genera...

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Autores principales: López-Campos, Guillermo, Aguado-Urda, Mónica, Blanco, María Mar, Gibello, Alicia, Cutuli, María Teresa, López-Alonso, Victoria, Martín-Sánchez, Fernando, Fernández-Garayzábal, José F
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416232/
https://www.ncbi.nlm.nih.gov/pubmed/25960872
http://dx.doi.org/10.1186/2047-2501-3-S1-S5
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author López-Campos, Guillermo
Aguado-Urda, Mónica
Blanco, María Mar
Gibello, Alicia
Cutuli, María Teresa
López-Alonso, Victoria
Martín-Sánchez, Fernando
Fernández-Garayzábal, José F
author_facet López-Campos, Guillermo
Aguado-Urda, Mónica
Blanco, María Mar
Gibello, Alicia
Cutuli, María Teresa
López-Alonso, Victoria
Martín-Sánchez, Fernando
Fernández-Garayzábal, José F
author_sort López-Campos, Guillermo
collection PubMed
description OBJECTIVE: To describe the importance of bioinformatics tools to analyze the big data yielded from new "omics" generation-methods, with the aim of unraveling the biology of the pathogen bacteria Lactococcus garvieae. METHODS: The paper provides the vision of the large volume of data generated from genome sequences, gene expression profiles by microarrays and other experimental methods that require biomedical informatics methods for management and analysis. RESULTS: The use of biomedical informatics methods improves the analysis of big data in order to obtain a comprehensive characterization and understanding of the biology of pathogenic organisms, such as L. garvieae. CONCLUSIONS: The "Big Data" concepts of high volume, veracity and variety are nowadays part of the research in microbiology associated with the use of multiple methods in the "omic" era. The use of biomedical informatics methods is a requisite necessary to improve the analysis of these data.
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spelling pubmed-44162322015-05-08 Lactococcus garvieae: a small bacteria and a big data world López-Campos, Guillermo Aguado-Urda, Mónica Blanco, María Mar Gibello, Alicia Cutuli, María Teresa López-Alonso, Victoria Martín-Sánchez, Fernando Fernández-Garayzábal, José F Health Inf Sci Syst Research OBJECTIVE: To describe the importance of bioinformatics tools to analyze the big data yielded from new "omics" generation-methods, with the aim of unraveling the biology of the pathogen bacteria Lactococcus garvieae. METHODS: The paper provides the vision of the large volume of data generated from genome sequences, gene expression profiles by microarrays and other experimental methods that require biomedical informatics methods for management and analysis. RESULTS: The use of biomedical informatics methods improves the analysis of big data in order to obtain a comprehensive characterization and understanding of the biology of pathogenic organisms, such as L. garvieae. CONCLUSIONS: The "Big Data" concepts of high volume, veracity and variety are nowadays part of the research in microbiology associated with the use of multiple methods in the "omic" era. The use of biomedical informatics methods is a requisite necessary to improve the analysis of these data. BioMed Central 2015-02-24 /pmc/articles/PMC4416232/ /pubmed/25960872 http://dx.doi.org/10.1186/2047-2501-3-S1-S5 Text en Copyright © 2015 Campos et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
López-Campos, Guillermo
Aguado-Urda, Mónica
Blanco, María Mar
Gibello, Alicia
Cutuli, María Teresa
López-Alonso, Victoria
Martín-Sánchez, Fernando
Fernández-Garayzábal, José F
Lactococcus garvieae: a small bacteria and a big data world
title Lactococcus garvieae: a small bacteria and a big data world
title_full Lactococcus garvieae: a small bacteria and a big data world
title_fullStr Lactococcus garvieae: a small bacteria and a big data world
title_full_unstemmed Lactococcus garvieae: a small bacteria and a big data world
title_short Lactococcus garvieae: a small bacteria and a big data world
title_sort lactococcus garvieae: a small bacteria and a big data world
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416232/
https://www.ncbi.nlm.nih.gov/pubmed/25960872
http://dx.doi.org/10.1186/2047-2501-3-S1-S5
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