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Exploring adverse drug events at the class level
BACKGROUND: While the association between a drug and an adverse event (ADE) is generally detected at the level of individual drugs, ADEs are often discussed at the class level, i.e., at the level of pharmacologic classes (e.g., in drug labels). We propose two approaches, one visual and one computati...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416343/ https://www.ncbi.nlm.nih.gov/pubmed/25937884 http://dx.doi.org/10.1186/s13326-015-0017-1 |
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author | Winnenburg, Rainer Sorbello, Alfred Bodenreider, Olivier |
author_facet | Winnenburg, Rainer Sorbello, Alfred Bodenreider, Olivier |
author_sort | Winnenburg, Rainer |
collection | PubMed |
description | BACKGROUND: While the association between a drug and an adverse event (ADE) is generally detected at the level of individual drugs, ADEs are often discussed at the class level, i.e., at the level of pharmacologic classes (e.g., in drug labels). We propose two approaches, one visual and one computational, to exploring the contribution of individual drugs to the class signal. METHODS: Having established a dataset of ADEs from MEDLINE, we aggregate drugs into ATC classes and ADEs into high-level MeSH terms. We compute statistical associations between drugs and ADEs at the drug level and at the class level. Finally, we visualize the signals at increasing levels of resolution using heat maps. We also automate the exploration of drug-ADE associations at the class level using clustering techniques. RESULTS: Using our visual approach, we were able to uncover known associations, e.g., between fluoroquinolones and tendon injuries, and between statins and rhabdomyolysis. Using our computational approach, we systematically analyzed 488 associations between a drug class and an ADE. CONCLUSIONS: The findings gained from our exploratory techniques should be of interest to the curators of ADE repositories and drug safety professionals. Our approach can be applied to different drug-ADE datasets, using different drug classification systems and different signal detection algorithms. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13326-015-0017-1) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4416343 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-44163432015-05-02 Exploring adverse drug events at the class level Winnenburg, Rainer Sorbello, Alfred Bodenreider, Olivier J Biomed Semantics Research Article BACKGROUND: While the association between a drug and an adverse event (ADE) is generally detected at the level of individual drugs, ADEs are often discussed at the class level, i.e., at the level of pharmacologic classes (e.g., in drug labels). We propose two approaches, one visual and one computational, to exploring the contribution of individual drugs to the class signal. METHODS: Having established a dataset of ADEs from MEDLINE, we aggregate drugs into ATC classes and ADEs into high-level MeSH terms. We compute statistical associations between drugs and ADEs at the drug level and at the class level. Finally, we visualize the signals at increasing levels of resolution using heat maps. We also automate the exploration of drug-ADE associations at the class level using clustering techniques. RESULTS: Using our visual approach, we were able to uncover known associations, e.g., between fluoroquinolones and tendon injuries, and between statins and rhabdomyolysis. Using our computational approach, we systematically analyzed 488 associations between a drug class and an ADE. CONCLUSIONS: The findings gained from our exploratory techniques should be of interest to the curators of ADE repositories and drug safety professionals. Our approach can be applied to different drug-ADE datasets, using different drug classification systems and different signal detection algorithms. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13326-015-0017-1) contains supplementary material, which is available to authorized users. BioMed Central 2015-05-01 /pmc/articles/PMC4416343/ /pubmed/25937884 http://dx.doi.org/10.1186/s13326-015-0017-1 Text en © Winnenburg et al.; licensee BioMed Central. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Winnenburg, Rainer Sorbello, Alfred Bodenreider, Olivier Exploring adverse drug events at the class level |
title | Exploring adverse drug events at the class level |
title_full | Exploring adverse drug events at the class level |
title_fullStr | Exploring adverse drug events at the class level |
title_full_unstemmed | Exploring adverse drug events at the class level |
title_short | Exploring adverse drug events at the class level |
title_sort | exploring adverse drug events at the class level |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416343/ https://www.ncbi.nlm.nih.gov/pubmed/25937884 http://dx.doi.org/10.1186/s13326-015-0017-1 |
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