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Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea

Iron reduction in subseafloor sulfate-depleted and methane-rich marine sediments is currently a subject of interest in subsurface geomicrobiology. While iron reduction and microorganisms involved have been well studied in marine surface sediments, little is known about microorganisms responsible for...

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Autores principales: Oni, Oluwatobi, Miyatake, Tetsuro, Kasten, Sabine, Richter-Heitmann, Tim, Fischer, David, Wagenknecht, Laura, Kulkarni, Ajinkya, Blumers, Mathias, Shylin, Sergii I., Ksenofontov, Vadim, Costa, Benilde F. O., Klingelhöfer, Göstar, Friedrich, Michael W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416451/
https://www.ncbi.nlm.nih.gov/pubmed/25983723
http://dx.doi.org/10.3389/fmicb.2015.00365
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author Oni, Oluwatobi
Miyatake, Tetsuro
Kasten, Sabine
Richter-Heitmann, Tim
Fischer, David
Wagenknecht, Laura
Kulkarni, Ajinkya
Blumers, Mathias
Shylin, Sergii I.
Ksenofontov, Vadim
Costa, Benilde F. O.
Klingelhöfer, Göstar
Friedrich, Michael W.
author_facet Oni, Oluwatobi
Miyatake, Tetsuro
Kasten, Sabine
Richter-Heitmann, Tim
Fischer, David
Wagenknecht, Laura
Kulkarni, Ajinkya
Blumers, Mathias
Shylin, Sergii I.
Ksenofontov, Vadim
Costa, Benilde F. O.
Klingelhöfer, Göstar
Friedrich, Michael W.
author_sort Oni, Oluwatobi
collection PubMed
description Iron reduction in subseafloor sulfate-depleted and methane-rich marine sediments is currently a subject of interest in subsurface geomicrobiology. While iron reduction and microorganisms involved have been well studied in marine surface sediments, little is known about microorganisms responsible for iron reduction in deep methanic sediments. Here, we used quantitative PCR-based 16S rRNA gene copy numbers and pyrosequencing-based relative abundances of bacteria and archaea to investigate covariance between distinct microbial populations and specific geochemical profiles in the top 5 m of sediment cores from the Helgoland mud area, North Sea. We found that gene copy numbers of bacteria and archaea were specifically higher around the peak of dissolved iron in the methanic zone (250–350 cm). The higher copy numbers at these depths were also reflected by the relative sequence abundances of members of the candidate division JS1, methanogenic and Methanohalobium/ANME-3 related archaea. The distribution of these populations was strongly correlated to the profile of pore-water Fe(2+) while that of Desulfobacteraceae corresponded to the pore-water sulfate profile. Furthermore, specific JS1 populations also strongly co-varied with the distribution of Methanosaetaceae in the methanic zone. Our data suggest that the interplay among JS1 bacteria, methanogenic archaea and Methanohalobium/ANME-3-related archaea may be important for iron reduction and methane cycling in deep methanic sediments of the Helgoland mud area and perhaps in other methane-rich depositional environments.
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spelling pubmed-44164512015-05-15 Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea Oni, Oluwatobi Miyatake, Tetsuro Kasten, Sabine Richter-Heitmann, Tim Fischer, David Wagenknecht, Laura Kulkarni, Ajinkya Blumers, Mathias Shylin, Sergii I. Ksenofontov, Vadim Costa, Benilde F. O. Klingelhöfer, Göstar Friedrich, Michael W. Front Microbiol Microbiology Iron reduction in subseafloor sulfate-depleted and methane-rich marine sediments is currently a subject of interest in subsurface geomicrobiology. While iron reduction and microorganisms involved have been well studied in marine surface sediments, little is known about microorganisms responsible for iron reduction in deep methanic sediments. Here, we used quantitative PCR-based 16S rRNA gene copy numbers and pyrosequencing-based relative abundances of bacteria and archaea to investigate covariance between distinct microbial populations and specific geochemical profiles in the top 5 m of sediment cores from the Helgoland mud area, North Sea. We found that gene copy numbers of bacteria and archaea were specifically higher around the peak of dissolved iron in the methanic zone (250–350 cm). The higher copy numbers at these depths were also reflected by the relative sequence abundances of members of the candidate division JS1, methanogenic and Methanohalobium/ANME-3 related archaea. The distribution of these populations was strongly correlated to the profile of pore-water Fe(2+) while that of Desulfobacteraceae corresponded to the pore-water sulfate profile. Furthermore, specific JS1 populations also strongly co-varied with the distribution of Methanosaetaceae in the methanic zone. Our data suggest that the interplay among JS1 bacteria, methanogenic archaea and Methanohalobium/ANME-3-related archaea may be important for iron reduction and methane cycling in deep methanic sediments of the Helgoland mud area and perhaps in other methane-rich depositional environments. Frontiers Media S.A. 2015-05-01 /pmc/articles/PMC4416451/ /pubmed/25983723 http://dx.doi.org/10.3389/fmicb.2015.00365 Text en Copyright © 2015 Oni, Miyatake, Kasten, Richter-Heitmann, Fischer, Wagenknecht, Kulkarni, Blumers, Shylin, Ksenofontov, Costa, Klingelhöfer and Friedrich. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Oni, Oluwatobi
Miyatake, Tetsuro
Kasten, Sabine
Richter-Heitmann, Tim
Fischer, David
Wagenknecht, Laura
Kulkarni, Ajinkya
Blumers, Mathias
Shylin, Sergii I.
Ksenofontov, Vadim
Costa, Benilde F. O.
Klingelhöfer, Göstar
Friedrich, Michael W.
Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea
title Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea
title_full Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea
title_fullStr Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea
title_full_unstemmed Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea
title_short Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea
title_sort distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the helgoland mud area, north sea
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416451/
https://www.ncbi.nlm.nih.gov/pubmed/25983723
http://dx.doi.org/10.3389/fmicb.2015.00365
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