Cargando…
Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea
Iron reduction in subseafloor sulfate-depleted and methane-rich marine sediments is currently a subject of interest in subsurface geomicrobiology. While iron reduction and microorganisms involved have been well studied in marine surface sediments, little is known about microorganisms responsible for...
Autores principales: | , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416451/ https://www.ncbi.nlm.nih.gov/pubmed/25983723 http://dx.doi.org/10.3389/fmicb.2015.00365 |
_version_ | 1782369238823993344 |
---|---|
author | Oni, Oluwatobi Miyatake, Tetsuro Kasten, Sabine Richter-Heitmann, Tim Fischer, David Wagenknecht, Laura Kulkarni, Ajinkya Blumers, Mathias Shylin, Sergii I. Ksenofontov, Vadim Costa, Benilde F. O. Klingelhöfer, Göstar Friedrich, Michael W. |
author_facet | Oni, Oluwatobi Miyatake, Tetsuro Kasten, Sabine Richter-Heitmann, Tim Fischer, David Wagenknecht, Laura Kulkarni, Ajinkya Blumers, Mathias Shylin, Sergii I. Ksenofontov, Vadim Costa, Benilde F. O. Klingelhöfer, Göstar Friedrich, Michael W. |
author_sort | Oni, Oluwatobi |
collection | PubMed |
description | Iron reduction in subseafloor sulfate-depleted and methane-rich marine sediments is currently a subject of interest in subsurface geomicrobiology. While iron reduction and microorganisms involved have been well studied in marine surface sediments, little is known about microorganisms responsible for iron reduction in deep methanic sediments. Here, we used quantitative PCR-based 16S rRNA gene copy numbers and pyrosequencing-based relative abundances of bacteria and archaea to investigate covariance between distinct microbial populations and specific geochemical profiles in the top 5 m of sediment cores from the Helgoland mud area, North Sea. We found that gene copy numbers of bacteria and archaea were specifically higher around the peak of dissolved iron in the methanic zone (250–350 cm). The higher copy numbers at these depths were also reflected by the relative sequence abundances of members of the candidate division JS1, methanogenic and Methanohalobium/ANME-3 related archaea. The distribution of these populations was strongly correlated to the profile of pore-water Fe(2+) while that of Desulfobacteraceae corresponded to the pore-water sulfate profile. Furthermore, specific JS1 populations also strongly co-varied with the distribution of Methanosaetaceae in the methanic zone. Our data suggest that the interplay among JS1 bacteria, methanogenic archaea and Methanohalobium/ANME-3-related archaea may be important for iron reduction and methane cycling in deep methanic sediments of the Helgoland mud area and perhaps in other methane-rich depositional environments. |
format | Online Article Text |
id | pubmed-4416451 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-44164512015-05-15 Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea Oni, Oluwatobi Miyatake, Tetsuro Kasten, Sabine Richter-Heitmann, Tim Fischer, David Wagenknecht, Laura Kulkarni, Ajinkya Blumers, Mathias Shylin, Sergii I. Ksenofontov, Vadim Costa, Benilde F. O. Klingelhöfer, Göstar Friedrich, Michael W. Front Microbiol Microbiology Iron reduction in subseafloor sulfate-depleted and methane-rich marine sediments is currently a subject of interest in subsurface geomicrobiology. While iron reduction and microorganisms involved have been well studied in marine surface sediments, little is known about microorganisms responsible for iron reduction in deep methanic sediments. Here, we used quantitative PCR-based 16S rRNA gene copy numbers and pyrosequencing-based relative abundances of bacteria and archaea to investigate covariance between distinct microbial populations and specific geochemical profiles in the top 5 m of sediment cores from the Helgoland mud area, North Sea. We found that gene copy numbers of bacteria and archaea were specifically higher around the peak of dissolved iron in the methanic zone (250–350 cm). The higher copy numbers at these depths were also reflected by the relative sequence abundances of members of the candidate division JS1, methanogenic and Methanohalobium/ANME-3 related archaea. The distribution of these populations was strongly correlated to the profile of pore-water Fe(2+) while that of Desulfobacteraceae corresponded to the pore-water sulfate profile. Furthermore, specific JS1 populations also strongly co-varied with the distribution of Methanosaetaceae in the methanic zone. Our data suggest that the interplay among JS1 bacteria, methanogenic archaea and Methanohalobium/ANME-3-related archaea may be important for iron reduction and methane cycling in deep methanic sediments of the Helgoland mud area and perhaps in other methane-rich depositional environments. Frontiers Media S.A. 2015-05-01 /pmc/articles/PMC4416451/ /pubmed/25983723 http://dx.doi.org/10.3389/fmicb.2015.00365 Text en Copyright © 2015 Oni, Miyatake, Kasten, Richter-Heitmann, Fischer, Wagenknecht, Kulkarni, Blumers, Shylin, Ksenofontov, Costa, Klingelhöfer and Friedrich. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Oni, Oluwatobi Miyatake, Tetsuro Kasten, Sabine Richter-Heitmann, Tim Fischer, David Wagenknecht, Laura Kulkarni, Ajinkya Blumers, Mathias Shylin, Sergii I. Ksenofontov, Vadim Costa, Benilde F. O. Klingelhöfer, Göstar Friedrich, Michael W. Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea |
title | Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea |
title_full | Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea |
title_fullStr | Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea |
title_full_unstemmed | Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea |
title_short | Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea |
title_sort | distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the helgoland mud area, north sea |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416451/ https://www.ncbi.nlm.nih.gov/pubmed/25983723 http://dx.doi.org/10.3389/fmicb.2015.00365 |
work_keys_str_mv | AT onioluwatobi distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT miyataketetsuro distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT kastensabine distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT richterheitmanntim distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT fischerdavid distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT wagenknechtlaura distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT kulkarniajinkya distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT blumersmathias distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT shylinsergiii distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT ksenofontovvadim distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT costabenildefo distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT klingelhofergostar distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea AT friedrichmichaelw distinctmicrobialpopulationsaretightlylinkedtotheprofileofdissolvedironinthemethanicsedimentsofthehelgolandmudareanorthsea |