Cargando…

An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics

Developing population dynamics models for zebrafish is crucial in order to extrapolate from toxicity data measured at the organism level to biological levels relevant to support and enhance ecological risk assessment. To achieve this, a dynamic energy budget for individual zebrafish (DEB model) was...

Descripción completa

Detalles Bibliográficos
Autores principales: Beaudouin, Rémy, Goussen, Benoit, Piccini, Benjamin, Augustine, Starrlight, Devillers, James, Brion, François, Péry, Alexandre R. R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4418570/
https://www.ncbi.nlm.nih.gov/pubmed/25938409
http://dx.doi.org/10.1371/journal.pone.0125841
_version_ 1782369480665464832
author Beaudouin, Rémy
Goussen, Benoit
Piccini, Benjamin
Augustine, Starrlight
Devillers, James
Brion, François
Péry, Alexandre R. R.
author_facet Beaudouin, Rémy
Goussen, Benoit
Piccini, Benjamin
Augustine, Starrlight
Devillers, James
Brion, François
Péry, Alexandre R. R.
author_sort Beaudouin, Rémy
collection PubMed
description Developing population dynamics models for zebrafish is crucial in order to extrapolate from toxicity data measured at the organism level to biological levels relevant to support and enhance ecological risk assessment. To achieve this, a dynamic energy budget for individual zebrafish (DEB model) was coupled to an individual based model of zebrafish population dynamics (IBM model). Next, we fitted the DEB model to new experimental data on zebrafish growth and reproduction thus improving existing models. We further analysed the DEB-model and DEB-IBM using a sensitivity analysis. Finally, the predictions of the DEB-IBM were compared to existing observations on natural zebrafish populations and the predicted population dynamics are realistic. While our zebrafish DEB-IBM model can still be improved by acquiring new experimental data on the most uncertain processes (e.g. survival or feeding), it can already serve to predict the impact of compounds at the population level.
format Online
Article
Text
id pubmed-4418570
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-44185702015-05-12 An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics Beaudouin, Rémy Goussen, Benoit Piccini, Benjamin Augustine, Starrlight Devillers, James Brion, François Péry, Alexandre R. R. PLoS One Research Article Developing population dynamics models for zebrafish is crucial in order to extrapolate from toxicity data measured at the organism level to biological levels relevant to support and enhance ecological risk assessment. To achieve this, a dynamic energy budget for individual zebrafish (DEB model) was coupled to an individual based model of zebrafish population dynamics (IBM model). Next, we fitted the DEB model to new experimental data on zebrafish growth and reproduction thus improving existing models. We further analysed the DEB-model and DEB-IBM using a sensitivity analysis. Finally, the predictions of the DEB-IBM were compared to existing observations on natural zebrafish populations and the predicted population dynamics are realistic. While our zebrafish DEB-IBM model can still be improved by acquiring new experimental data on the most uncertain processes (e.g. survival or feeding), it can already serve to predict the impact of compounds at the population level. Public Library of Science 2015-05-04 /pmc/articles/PMC4418570/ /pubmed/25938409 http://dx.doi.org/10.1371/journal.pone.0125841 Text en © 2015 Beaudouin et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Beaudouin, Rémy
Goussen, Benoit
Piccini, Benjamin
Augustine, Starrlight
Devillers, James
Brion, François
Péry, Alexandre R. R.
An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics
title An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics
title_full An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics
title_fullStr An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics
title_full_unstemmed An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics
title_short An Individual-Based Model of Zebrafish Population Dynamics Accounting for Energy Dynamics
title_sort individual-based model of zebrafish population dynamics accounting for energy dynamics
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4418570/
https://www.ncbi.nlm.nih.gov/pubmed/25938409
http://dx.doi.org/10.1371/journal.pone.0125841
work_keys_str_mv AT beaudouinremy anindividualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT goussenbenoit anindividualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT piccinibenjamin anindividualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT augustinestarrlight anindividualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT devillersjames anindividualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT brionfrancois anindividualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT peryalexandrerr anindividualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT beaudouinremy individualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT goussenbenoit individualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT piccinibenjamin individualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT augustinestarrlight individualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT devillersjames individualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT brionfrancois individualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics
AT peryalexandrerr individualbasedmodelofzebrafishpopulationdynamicsaccountingforenergydynamics