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Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds

The likelihood of occurrence of intermolecular contacts in crystals of halogenated organic compounds has been analysed statistically using tools based on the Hirshfeld surface. Several families of small halogenated molecules (containing organic F, Cl, Br or I atoms) were analysed, based on chemical...

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Autores principales: Jelsch, Christian, Soudani, Sarra, Ben Nasr, Cherif
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4420543/
https://www.ncbi.nlm.nih.gov/pubmed/25995842
http://dx.doi.org/10.1107/S2052252515003255
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author Jelsch, Christian
Soudani, Sarra
Ben Nasr, Cherif
author_facet Jelsch, Christian
Soudani, Sarra
Ben Nasr, Cherif
author_sort Jelsch, Christian
collection PubMed
description The likelihood of occurrence of intermolecular contacts in crystals of halogenated organic compounds has been analysed statistically using tools based on the Hirshfeld surface. Several families of small halogenated molecules (containing organic F, Cl, Br or I atoms) were analysed, based on chemical composition and aromatic or aliphatic character. The behaviour of crystal contacts was also probed for molecules containing O or N. So-called halogen bonding (a halogen making short interactions with O or N, or a π interaction with C) is generally disfavoured, except when H is scarce on the molecular surface. Similarly, halogen⋯halogen contacts are more rare than expected, except for molecules that are poor in H. In general, the H atom is found to be the preferred partner of organic halogen atoms in crystal structures. On the other hand, C⋯C interactions in parallel π-stacking have a high propensity to occur in halogenated aromatic molecules. The behaviour of the four different halogen species (F, Cl, Br, I) is compared in several chemical composition contexts. The analysis tool can be refined by distinguishing several types for a given chemical species, such as H atoms bound to O or C. Such distinction shows, for instance, that C—H⋯Cl and O—H⋯O are the preferred interactions in compounds containing both O and Cl.
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spelling pubmed-44205432015-05-20 Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds Jelsch, Christian Soudani, Sarra Ben Nasr, Cherif IUCrJ Research Papers The likelihood of occurrence of intermolecular contacts in crystals of halogenated organic compounds has been analysed statistically using tools based on the Hirshfeld surface. Several families of small halogenated molecules (containing organic F, Cl, Br or I atoms) were analysed, based on chemical composition and aromatic or aliphatic character. The behaviour of crystal contacts was also probed for molecules containing O or N. So-called halogen bonding (a halogen making short interactions with O or N, or a π interaction with C) is generally disfavoured, except when H is scarce on the molecular surface. Similarly, halogen⋯halogen contacts are more rare than expected, except for molecules that are poor in H. In general, the H atom is found to be the preferred partner of organic halogen atoms in crystal structures. On the other hand, C⋯C interactions in parallel π-stacking have a high propensity to occur in halogenated aromatic molecules. The behaviour of the four different halogen species (F, Cl, Br, I) is compared in several chemical composition contexts. The analysis tool can be refined by distinguishing several types for a given chemical species, such as H atoms bound to O or C. Such distinction shows, for instance, that C—H⋯Cl and O—H⋯O are the preferred interactions in compounds containing both O and Cl. International Union of Crystallography 2015-04-10 /pmc/articles/PMC4420543/ /pubmed/25995842 http://dx.doi.org/10.1107/S2052252515003255 Text en © Christian Jelsch et al. 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Jelsch, Christian
Soudani, Sarra
Ben Nasr, Cherif
Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds
title Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds
title_full Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds
title_fullStr Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds
title_full_unstemmed Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds
title_short Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds
title_sort likelihood of atom–atom contacts in crystal structures of halogenated organic compounds
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4420543/
https://www.ncbi.nlm.nih.gov/pubmed/25995842
http://dx.doi.org/10.1107/S2052252515003255
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