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Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds
The likelihood of occurrence of intermolecular contacts in crystals of halogenated organic compounds has been analysed statistically using tools based on the Hirshfeld surface. Several families of small halogenated molecules (containing organic F, Cl, Br or I atoms) were analysed, based on chemical...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4420543/ https://www.ncbi.nlm.nih.gov/pubmed/25995842 http://dx.doi.org/10.1107/S2052252515003255 |
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author | Jelsch, Christian Soudani, Sarra Ben Nasr, Cherif |
author_facet | Jelsch, Christian Soudani, Sarra Ben Nasr, Cherif |
author_sort | Jelsch, Christian |
collection | PubMed |
description | The likelihood of occurrence of intermolecular contacts in crystals of halogenated organic compounds has been analysed statistically using tools based on the Hirshfeld surface. Several families of small halogenated molecules (containing organic F, Cl, Br or I atoms) were analysed, based on chemical composition and aromatic or aliphatic character. The behaviour of crystal contacts was also probed for molecules containing O or N. So-called halogen bonding (a halogen making short interactions with O or N, or a π interaction with C) is generally disfavoured, except when H is scarce on the molecular surface. Similarly, halogen⋯halogen contacts are more rare than expected, except for molecules that are poor in H. In general, the H atom is found to be the preferred partner of organic halogen atoms in crystal structures. On the other hand, C⋯C interactions in parallel π-stacking have a high propensity to occur in halogenated aromatic molecules. The behaviour of the four different halogen species (F, Cl, Br, I) is compared in several chemical composition contexts. The analysis tool can be refined by distinguishing several types for a given chemical species, such as H atoms bound to O or C. Such distinction shows, for instance, that C—H⋯Cl and O—H⋯O are the preferred interactions in compounds containing both O and Cl. |
format | Online Article Text |
id | pubmed-4420543 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-44205432015-05-20 Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds Jelsch, Christian Soudani, Sarra Ben Nasr, Cherif IUCrJ Research Papers The likelihood of occurrence of intermolecular contacts in crystals of halogenated organic compounds has been analysed statistically using tools based on the Hirshfeld surface. Several families of small halogenated molecules (containing organic F, Cl, Br or I atoms) were analysed, based on chemical composition and aromatic or aliphatic character. The behaviour of crystal contacts was also probed for molecules containing O or N. So-called halogen bonding (a halogen making short interactions with O or N, or a π interaction with C) is generally disfavoured, except when H is scarce on the molecular surface. Similarly, halogen⋯halogen contacts are more rare than expected, except for molecules that are poor in H. In general, the H atom is found to be the preferred partner of organic halogen atoms in crystal structures. On the other hand, C⋯C interactions in parallel π-stacking have a high propensity to occur in halogenated aromatic molecules. The behaviour of the four different halogen species (F, Cl, Br, I) is compared in several chemical composition contexts. The analysis tool can be refined by distinguishing several types for a given chemical species, such as H atoms bound to O or C. Such distinction shows, for instance, that C—H⋯Cl and O—H⋯O are the preferred interactions in compounds containing both O and Cl. International Union of Crystallography 2015-04-10 /pmc/articles/PMC4420543/ /pubmed/25995842 http://dx.doi.org/10.1107/S2052252515003255 Text en © Christian Jelsch et al. 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Jelsch, Christian Soudani, Sarra Ben Nasr, Cherif Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds |
title | Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds |
title_full | Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds |
title_fullStr | Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds |
title_full_unstemmed | Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds |
title_short | Likelihood of atom–atom contacts in crystal structures of halogenated organic compounds |
title_sort | likelihood of atom–atom contacts in crystal structures of halogenated organic compounds |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4420543/ https://www.ncbi.nlm.nih.gov/pubmed/25995842 http://dx.doi.org/10.1107/S2052252515003255 |
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