Cargando…
A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems
Small-angle X-ray and neutron scattering (SAXS and SANS) experiments on solutions provide rapidly decaying scattering curves, often with a poor signal-to-noise ratio, especially at higher angles. On modern instruments, the noise is partially compensated for by oversampling, thanks to the fact that t...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4420545/ https://www.ncbi.nlm.nih.gov/pubmed/25995844 http://dx.doi.org/10.1107/S2052252515005163 |
_version_ | 1782369741108674560 |
---|---|
author | Konarev, Petr V. Svergun, Dmitri I. |
author_facet | Konarev, Petr V. Svergun, Dmitri I. |
author_sort | Konarev, Petr V. |
collection | PubMed |
description | Small-angle X-ray and neutron scattering (SAXS and SANS) experiments on solutions provide rapidly decaying scattering curves, often with a poor signal-to-noise ratio, especially at higher angles. On modern instruments, the noise is partially compensated for by oversampling, thanks to the fact that the angular increment in the data is small compared with that needed to describe adequately the local behaviour and features of the scattering curve. Given a (noisy) experimental data set, an important question arises as to which part of the data still contains useful information and should be taken into account for the interpretation and model building. Here, it is demonstrated that, for monodisperse systems, the useful experimental data range is defined by the number of meaningful Shannon channels that can be determined from the data set. An algorithm to determine this number and thus the data range is developed, and it is tested on a number of simulated data sets with various noise levels and with different degrees of oversampling, corresponding to typical SAXS/SANS experiments. The method is implemented in a computer program and examples of its application to analyse the experimental data recorded under various conditions are presented. The program can be employed to discard experimental data containing no useful information in automated pipelines, in modelling procedures, and for data deposition or publication. The software is freely accessible to academic users. |
format | Online Article Text |
id | pubmed-4420545 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-44205452015-05-20 A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems Konarev, Petr V. Svergun, Dmitri I. IUCrJ Research Papers Small-angle X-ray and neutron scattering (SAXS and SANS) experiments on solutions provide rapidly decaying scattering curves, often with a poor signal-to-noise ratio, especially at higher angles. On modern instruments, the noise is partially compensated for by oversampling, thanks to the fact that the angular increment in the data is small compared with that needed to describe adequately the local behaviour and features of the scattering curve. Given a (noisy) experimental data set, an important question arises as to which part of the data still contains useful information and should be taken into account for the interpretation and model building. Here, it is demonstrated that, for monodisperse systems, the useful experimental data range is defined by the number of meaningful Shannon channels that can be determined from the data set. An algorithm to determine this number and thus the data range is developed, and it is tested on a number of simulated data sets with various noise levels and with different degrees of oversampling, corresponding to typical SAXS/SANS experiments. The method is implemented in a computer program and examples of its application to analyse the experimental data recorded under various conditions are presented. The program can be employed to discard experimental data containing no useful information in automated pipelines, in modelling procedures, and for data deposition or publication. The software is freely accessible to academic users. International Union of Crystallography 2015-04-21 /pmc/articles/PMC4420545/ /pubmed/25995844 http://dx.doi.org/10.1107/S2052252515005163 Text en © Konarev and Svergun 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Konarev, Petr V. Svergun, Dmitri I. A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems |
title |
A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems |
title_full |
A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems |
title_fullStr |
A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems |
title_full_unstemmed |
A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems |
title_short |
A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems |
title_sort | posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4420545/ https://www.ncbi.nlm.nih.gov/pubmed/25995844 http://dx.doi.org/10.1107/S2052252515005163 |
work_keys_str_mv | AT konarevpetrv aposteriorideterminationoftheusefuldatarangeforsmallanglescatteringexperimentsondilutemonodispersesystems AT svergundmitrii aposteriorideterminationoftheusefuldatarangeforsmallanglescatteringexperimentsondilutemonodispersesystems AT konarevpetrv posteriorideterminationoftheusefuldatarangeforsmallanglescatteringexperimentsondilutemonodispersesystems AT svergundmitrii posteriorideterminationoftheusefuldatarangeforsmallanglescatteringexperimentsondilutemonodispersesystems |