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Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA

Coherent X-ray diffraction imaging is a promising technique for visualizing the structures of non-crystalline particles with dimensions of micrometers to sub-micrometers. Recently, X-ray free-electron laser sources have enabled efficient experiments in the ‘diffraction before destruction’ scheme. Di...

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Autores principales: Sekiguchi, Yuki, Oroguchi, Tomotaka, Takayama, Yuki, Nakasako, Masayoshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4421847/
https://www.ncbi.nlm.nih.gov/pubmed/24763651
http://dx.doi.org/10.1107/S1600577514003439
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author Sekiguchi, Yuki
Oroguchi, Tomotaka
Takayama, Yuki
Nakasako, Masayoshi
author_facet Sekiguchi, Yuki
Oroguchi, Tomotaka
Takayama, Yuki
Nakasako, Masayoshi
author_sort Sekiguchi, Yuki
collection PubMed
description Coherent X-ray diffraction imaging is a promising technique for visualizing the structures of non-crystalline particles with dimensions of micrometers to sub-micrometers. Recently, X-ray free-electron laser sources have enabled efficient experiments in the ‘diffraction before destruction’ scheme. Diffraction experiments have been conducted at SPring-8 Angstrom Compact free-electron LAser (SACLA) using the custom-made diffraction apparatus KOTOBUKI-1 and two multiport CCD detectors. In the experiments, ten thousands of single-shot diffraction patterns can be collected within several hours. Then, diffraction patterns with significant levels of intensity suitable for structural analysis must be found, direct-beam positions in diffraction patterns determined, diffraction patterns from the two CCD detectors merged, and phase-retrieval calculations for structural analyses performed. A software suite named SITENNO has been developed to semi-automatically apply the four-step processing to a huge number of diffraction data. Here, details of the algorithm used in the suite are described and the performance for approximately 9000 diffraction patterns collected from cuboid-shaped copper oxide particles reported. Using the SITENNO suite, it is possible to conduct experiments with data processing immediately after the data collection, and to characterize the size distribution and internal structures of the non-crystalline particles.
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spelling pubmed-44218472015-05-20 Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA Sekiguchi, Yuki Oroguchi, Tomotaka Takayama, Yuki Nakasako, Masayoshi J Synchrotron Radiat Research Papers Coherent X-ray diffraction imaging is a promising technique for visualizing the structures of non-crystalline particles with dimensions of micrometers to sub-micrometers. Recently, X-ray free-electron laser sources have enabled efficient experiments in the ‘diffraction before destruction’ scheme. Diffraction experiments have been conducted at SPring-8 Angstrom Compact free-electron LAser (SACLA) using the custom-made diffraction apparatus KOTOBUKI-1 and two multiport CCD detectors. In the experiments, ten thousands of single-shot diffraction patterns can be collected within several hours. Then, diffraction patterns with significant levels of intensity suitable for structural analysis must be found, direct-beam positions in diffraction patterns determined, diffraction patterns from the two CCD detectors merged, and phase-retrieval calculations for structural analyses performed. A software suite named SITENNO has been developed to semi-automatically apply the four-step processing to a huge number of diffraction data. Here, details of the algorithm used in the suite are described and the performance for approximately 9000 diffraction patterns collected from cuboid-shaped copper oxide particles reported. Using the SITENNO suite, it is possible to conduct experiments with data processing immediately after the data collection, and to characterize the size distribution and internal structures of the non-crystalline particles. International Union of Crystallography 2014-03-15 /pmc/articles/PMC4421847/ /pubmed/24763651 http://dx.doi.org/10.1107/S1600577514003439 Text en © Yuki Sekiguchi et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Sekiguchi, Yuki
Oroguchi, Tomotaka
Takayama, Yuki
Nakasako, Masayoshi
Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA
title Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA
title_full Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA
title_fullStr Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA
title_full_unstemmed Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA
title_short Data processing software suite SITENNO for coherent X-ray diffraction imaging using the X-ray free-electron laser SACLA
title_sort data processing software suite sitenno for coherent x-ray diffraction imaging using the x-ray free-electron laser sacla
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4421847/
https://www.ncbi.nlm.nih.gov/pubmed/24763651
http://dx.doi.org/10.1107/S1600577514003439
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