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Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the oligotrophic oceans, and a model system in marine microbial ecology. Here we report 27 new whole genome sequences (2 complete and closed; 25 of draft quality) of cultured isolates, representing five...

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Autores principales: Biller, Steven J., Berube, Paul M., Berta-Thompson, Jessie W., Kelly, Libusha, Roggensack, Sara E., Awad, Lana, Roache-Johnson, Kathryn H., Ding, Huiming, Giovannoni, Stephen J., Rocap, Gabrielle, Moore, Lisa R., Chisholm, Sallie W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4421930/
https://www.ncbi.nlm.nih.gov/pubmed/25977791
http://dx.doi.org/10.1038/sdata.2014.34
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author Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Rocap, Gabrielle
Moore, Lisa R.
Chisholm, Sallie W.
author_facet Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Rocap, Gabrielle
Moore, Lisa R.
Chisholm, Sallie W.
author_sort Biller, Steven J.
collection PubMed
description The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the oligotrophic oceans, and a model system in marine microbial ecology. Here we report 27 new whole genome sequences (2 complete and closed; 25 of draft quality) of cultured isolates, representing five major phylogenetic clades of Prochlorococcus. The sequenced strains were isolated from diverse regions of the oceans, facilitating studies of the drivers of microbial diversity—both in the lab and in the field. To improve the utility of these genomes for comparative genomics, we also define pre-computed clusters of orthologous groups of proteins (COGs), indicating how genes are distributed among these and other publicly available Prochlorococcus genomes. These data represent a significant expansion of Prochlorococcus reference genomes that are useful for numerous applications in microbial ecology, evolution and oceanography.
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spelling pubmed-44219302015-05-14 Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus Biller, Steven J. Berube, Paul M. Berta-Thompson, Jessie W. Kelly, Libusha Roggensack, Sara E. Awad, Lana Roache-Johnson, Kathryn H. Ding, Huiming Giovannoni, Stephen J. Rocap, Gabrielle Moore, Lisa R. Chisholm, Sallie W. Sci Data Data Descriptor The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the oligotrophic oceans, and a model system in marine microbial ecology. Here we report 27 new whole genome sequences (2 complete and closed; 25 of draft quality) of cultured isolates, representing five major phylogenetic clades of Prochlorococcus. The sequenced strains were isolated from diverse regions of the oceans, facilitating studies of the drivers of microbial diversity—both in the lab and in the field. To improve the utility of these genomes for comparative genomics, we also define pre-computed clusters of orthologous groups of proteins (COGs), indicating how genes are distributed among these and other publicly available Prochlorococcus genomes. These data represent a significant expansion of Prochlorococcus reference genomes that are useful for numerous applications in microbial ecology, evolution and oceanography. Nature Publishing Group 2014-09-30 /pmc/articles/PMC4421930/ /pubmed/25977791 http://dx.doi.org/10.1038/sdata.2014.34 Text en Copyright © 2014, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse.
spellingShingle Data Descriptor
Biller, Steven J.
Berube, Paul M.
Berta-Thompson, Jessie W.
Kelly, Libusha
Roggensack, Sara E.
Awad, Lana
Roache-Johnson, Kathryn H.
Ding, Huiming
Giovannoni, Stephen J.
Rocap, Gabrielle
Moore, Lisa R.
Chisholm, Sallie W.
Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
title Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
title_full Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
title_fullStr Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
title_full_unstemmed Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
title_short Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
title_sort genomes of diverse isolates of the marine cyanobacterium prochlorococcus
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4421930/
https://www.ncbi.nlm.nih.gov/pubmed/25977791
http://dx.doi.org/10.1038/sdata.2014.34
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