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Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the oligotrophic oceans, and a model system in marine microbial ecology. Here we report 27 new whole genome sequences (2 complete and closed; 25 of draft quality) of cultured isolates, representing five...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4421930/ https://www.ncbi.nlm.nih.gov/pubmed/25977791 http://dx.doi.org/10.1038/sdata.2014.34 |
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author | Biller, Steven J. Berube, Paul M. Berta-Thompson, Jessie W. Kelly, Libusha Roggensack, Sara E. Awad, Lana Roache-Johnson, Kathryn H. Ding, Huiming Giovannoni, Stephen J. Rocap, Gabrielle Moore, Lisa R. Chisholm, Sallie W. |
author_facet | Biller, Steven J. Berube, Paul M. Berta-Thompson, Jessie W. Kelly, Libusha Roggensack, Sara E. Awad, Lana Roache-Johnson, Kathryn H. Ding, Huiming Giovannoni, Stephen J. Rocap, Gabrielle Moore, Lisa R. Chisholm, Sallie W. |
author_sort | Biller, Steven J. |
collection | PubMed |
description | The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the oligotrophic oceans, and a model system in marine microbial ecology. Here we report 27 new whole genome sequences (2 complete and closed; 25 of draft quality) of cultured isolates, representing five major phylogenetic clades of Prochlorococcus. The sequenced strains were isolated from diverse regions of the oceans, facilitating studies of the drivers of microbial diversity—both in the lab and in the field. To improve the utility of these genomes for comparative genomics, we also define pre-computed clusters of orthologous groups of proteins (COGs), indicating how genes are distributed among these and other publicly available Prochlorococcus genomes. These data represent a significant expansion of Prochlorococcus reference genomes that are useful for numerous applications in microbial ecology, evolution and oceanography. |
format | Online Article Text |
id | pubmed-4421930 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-44219302015-05-14 Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus Biller, Steven J. Berube, Paul M. Berta-Thompson, Jessie W. Kelly, Libusha Roggensack, Sara E. Awad, Lana Roache-Johnson, Kathryn H. Ding, Huiming Giovannoni, Stephen J. Rocap, Gabrielle Moore, Lisa R. Chisholm, Sallie W. Sci Data Data Descriptor The marine cyanobacterium Prochlorococcus is the numerically dominant photosynthetic organism in the oligotrophic oceans, and a model system in marine microbial ecology. Here we report 27 new whole genome sequences (2 complete and closed; 25 of draft quality) of cultured isolates, representing five major phylogenetic clades of Prochlorococcus. The sequenced strains were isolated from diverse regions of the oceans, facilitating studies of the drivers of microbial diversity—both in the lab and in the field. To improve the utility of these genomes for comparative genomics, we also define pre-computed clusters of orthologous groups of proteins (COGs), indicating how genes are distributed among these and other publicly available Prochlorococcus genomes. These data represent a significant expansion of Prochlorococcus reference genomes that are useful for numerous applications in microbial ecology, evolution and oceanography. Nature Publishing Group 2014-09-30 /pmc/articles/PMC4421930/ /pubmed/25977791 http://dx.doi.org/10.1038/sdata.2014.34 Text en Copyright © 2014, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse. |
spellingShingle | Data Descriptor Biller, Steven J. Berube, Paul M. Berta-Thompson, Jessie W. Kelly, Libusha Roggensack, Sara E. Awad, Lana Roache-Johnson, Kathryn H. Ding, Huiming Giovannoni, Stephen J. Rocap, Gabrielle Moore, Lisa R. Chisholm, Sallie W. Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus |
title | Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
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title_full | Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
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title_fullStr | Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
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title_full_unstemmed | Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
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title_short | Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus
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title_sort | genomes of diverse isolates of the marine cyanobacterium prochlorococcus |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4421930/ https://www.ncbi.nlm.nih.gov/pubmed/25977791 http://dx.doi.org/10.1038/sdata.2014.34 |
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