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An open science resource for establishing reliability and reproducibility in functional connectomics

Efforts to identify meaningful functional imaging-based biomarkers are limited by the ability to reliably characterize inter-individual differences in human brain function. Although a growing number of connectomics-based measures are reported to have moderate to high test-retest reliability, the var...

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Autores principales: Zuo, Xi-Nian, Anderson, Jeffrey S, Bellec, Pierre, Birn, Rasmus M, Biswal, Bharat B, Blautzik, Janusch, Breitner, John C.S, Buckner, Randy L, Calhoun, Vince D, Castellanos, F. Xavier, Chen, Antao, Chen, Bing, Chen, Jiangtao, Chen, Xu, Colcombe, Stanley J, Courtney, William, Craddock, R Cameron, Di Martino, Adriana, Dong, Hao-Ming, Fu, Xiaolan, Gong, Qiyong, Gorgolewski, Krzysztof J, Han, Ying, He, Ye, He, Yong, Ho, Erica, Holmes, Avram, Hou, Xiao-Hui, Huckins, Jeremy, Jiang, Tianzi, Jiang, Yi, Kelley, William, Kelly, Clare, King, Margaret, LaConte, Stephen M, Lainhart, Janet E, Lei, Xu, Li, Hui-Jie, Li, Kaiming, Li, Kuncheng, Lin, Qixiang, Liu, Dongqiang, Liu, Jia, Liu, Xun, Liu, Yijun, Lu, Guangming, Lu, Jie, Luna, Beatriz, Luo, Jing, Lurie, Daniel, Mao, Ying, Margulies, Daniel S, Mayer, Andrew R, Meindl, Thomas, Meyerand, Mary E, Nan, Weizhi, Nielsen, Jared A, O’Connor, David, Paulsen, David, Prabhakaran, Vivek, Qi, Zhigang, Qiu, Jiang, Shao, Chunhong, Shehzad, Zarrar, Tang, Weijun, Villringer, Arno, Wang, Huiling, Wang, Kai, Wei, Dongtao, Wei, Gao-Xia, Weng, Xu-Chu, Wu, Xuehai, Xu, Ting, Yang, Ning, Yang, Zhi, Zang, Yu-Feng, Zhang, Lei, Zhang, Qinglin, Zhang, Zhe, Zhang, Zhiqiang, Zhao, Ke, Zhen, Zonglei, Zhou, Yuan, Zhu, Xing-Ting, Milham, Michael P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4421932/
https://www.ncbi.nlm.nih.gov/pubmed/25977800
http://dx.doi.org/10.1038/sdata.2014.49
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author Zuo, Xi-Nian
Anderson, Jeffrey S
Bellec, Pierre
Birn, Rasmus M
Biswal, Bharat B
Blautzik, Janusch
Breitner, John C.S
Buckner, Randy L
Calhoun, Vince D
Castellanos, F. Xavier
Chen, Antao
Chen, Bing
Chen, Jiangtao
Chen, Xu
Colcombe, Stanley J
Courtney, William
Craddock, R Cameron
Di Martino, Adriana
Dong, Hao-Ming
Fu, Xiaolan
Gong, Qiyong
Gorgolewski, Krzysztof J
Han, Ying
He, Ye
He, Yong
Ho, Erica
Holmes, Avram
Hou, Xiao-Hui
Huckins, Jeremy
Jiang, Tianzi
Jiang, Yi
Kelley, William
Kelly, Clare
King, Margaret
LaConte, Stephen M
Lainhart, Janet E
Lei, Xu
Li, Hui-Jie
Li, Kaiming
Li, Kuncheng
Lin, Qixiang
Liu, Dongqiang
Liu, Jia
Liu, Xun
Liu, Yijun
Lu, Guangming
Lu, Jie
Luna, Beatriz
Luo, Jing
Lurie, Daniel
Mao, Ying
Margulies, Daniel S
Mayer, Andrew R
Meindl, Thomas
Meyerand, Mary E
Nan, Weizhi
Nielsen, Jared A
O’Connor, David
Paulsen, David
Prabhakaran, Vivek
Qi, Zhigang
Qiu, Jiang
Shao, Chunhong
Shehzad, Zarrar
Tang, Weijun
Villringer, Arno
Wang, Huiling
Wang, Kai
Wei, Dongtao
Wei, Gao-Xia
Weng, Xu-Chu
Wu, Xuehai
Xu, Ting
Yang, Ning
Yang, Zhi
Zang, Yu-Feng
Zhang, Lei
Zhang, Qinglin
Zhang, Zhe
Zhang, Zhiqiang
Zhao, Ke
Zhen, Zonglei
Zhou, Yuan
Zhu, Xing-Ting
Milham, Michael P
author_facet Zuo, Xi-Nian
Anderson, Jeffrey S
Bellec, Pierre
Birn, Rasmus M
Biswal, Bharat B
Blautzik, Janusch
Breitner, John C.S
Buckner, Randy L
Calhoun, Vince D
Castellanos, F. Xavier
Chen, Antao
Chen, Bing
Chen, Jiangtao
Chen, Xu
Colcombe, Stanley J
Courtney, William
Craddock, R Cameron
Di Martino, Adriana
Dong, Hao-Ming
Fu, Xiaolan
Gong, Qiyong
Gorgolewski, Krzysztof J
Han, Ying
He, Ye
He, Yong
Ho, Erica
Holmes, Avram
Hou, Xiao-Hui
Huckins, Jeremy
Jiang, Tianzi
Jiang, Yi
Kelley, William
Kelly, Clare
King, Margaret
LaConte, Stephen M
Lainhart, Janet E
Lei, Xu
Li, Hui-Jie
Li, Kaiming
Li, Kuncheng
Lin, Qixiang
Liu, Dongqiang
Liu, Jia
Liu, Xun
Liu, Yijun
Lu, Guangming
Lu, Jie
Luna, Beatriz
Luo, Jing
Lurie, Daniel
Mao, Ying
Margulies, Daniel S
Mayer, Andrew R
Meindl, Thomas
Meyerand, Mary E
Nan, Weizhi
Nielsen, Jared A
O’Connor, David
Paulsen, David
Prabhakaran, Vivek
Qi, Zhigang
Qiu, Jiang
Shao, Chunhong
Shehzad, Zarrar
Tang, Weijun
Villringer, Arno
Wang, Huiling
Wang, Kai
Wei, Dongtao
Wei, Gao-Xia
Weng, Xu-Chu
Wu, Xuehai
Xu, Ting
Yang, Ning
Yang, Zhi
Zang, Yu-Feng
Zhang, Lei
Zhang, Qinglin
Zhang, Zhe
Zhang, Zhiqiang
Zhao, Ke
Zhen, Zonglei
Zhou, Yuan
Zhu, Xing-Ting
Milham, Michael P
author_sort Zuo, Xi-Nian
collection PubMed
description Efforts to identify meaningful functional imaging-based biomarkers are limited by the ability to reliably characterize inter-individual differences in human brain function. Although a growing number of connectomics-based measures are reported to have moderate to high test-retest reliability, the variability in data acquisition, experimental designs, and analytic methods precludes the ability to generalize results. The Consortium for Reliability and Reproducibility (CoRR) is working to address this challenge and establish test-retest reliability as a minimum standard for methods development in functional connectomics. Specifically, CoRR has aggregated 1,629 typical individuals’ resting state fMRI (rfMRI) data (5,093 rfMRI scans) from 18 international sites, and is openly sharing them via the International Data-sharing Neuroimaging Initiative (INDI). To allow researchers to generate various estimates of reliability and reproducibility, a variety of data acquisition procedures and experimental designs are included. Similarly, to enable users to assess the impact of commonly encountered artifacts (for example, motion) on characterizations of inter-individual variation, datasets of varying quality are included.
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spelling pubmed-44219322015-05-14 An open science resource for establishing reliability and reproducibility in functional connectomics Zuo, Xi-Nian Anderson, Jeffrey S Bellec, Pierre Birn, Rasmus M Biswal, Bharat B Blautzik, Janusch Breitner, John C.S Buckner, Randy L Calhoun, Vince D Castellanos, F. Xavier Chen, Antao Chen, Bing Chen, Jiangtao Chen, Xu Colcombe, Stanley J Courtney, William Craddock, R Cameron Di Martino, Adriana Dong, Hao-Ming Fu, Xiaolan Gong, Qiyong Gorgolewski, Krzysztof J Han, Ying He, Ye He, Yong Ho, Erica Holmes, Avram Hou, Xiao-Hui Huckins, Jeremy Jiang, Tianzi Jiang, Yi Kelley, William Kelly, Clare King, Margaret LaConte, Stephen M Lainhart, Janet E Lei, Xu Li, Hui-Jie Li, Kaiming Li, Kuncheng Lin, Qixiang Liu, Dongqiang Liu, Jia Liu, Xun Liu, Yijun Lu, Guangming Lu, Jie Luna, Beatriz Luo, Jing Lurie, Daniel Mao, Ying Margulies, Daniel S Mayer, Andrew R Meindl, Thomas Meyerand, Mary E Nan, Weizhi Nielsen, Jared A O’Connor, David Paulsen, David Prabhakaran, Vivek Qi, Zhigang Qiu, Jiang Shao, Chunhong Shehzad, Zarrar Tang, Weijun Villringer, Arno Wang, Huiling Wang, Kai Wei, Dongtao Wei, Gao-Xia Weng, Xu-Chu Wu, Xuehai Xu, Ting Yang, Ning Yang, Zhi Zang, Yu-Feng Zhang, Lei Zhang, Qinglin Zhang, Zhe Zhang, Zhiqiang Zhao, Ke Zhen, Zonglei Zhou, Yuan Zhu, Xing-Ting Milham, Michael P Sci Data Data Descriptor Efforts to identify meaningful functional imaging-based biomarkers are limited by the ability to reliably characterize inter-individual differences in human brain function. Although a growing number of connectomics-based measures are reported to have moderate to high test-retest reliability, the variability in data acquisition, experimental designs, and analytic methods precludes the ability to generalize results. The Consortium for Reliability and Reproducibility (CoRR) is working to address this challenge and establish test-retest reliability as a minimum standard for methods development in functional connectomics. Specifically, CoRR has aggregated 1,629 typical individuals’ resting state fMRI (rfMRI) data (5,093 rfMRI scans) from 18 international sites, and is openly sharing them via the International Data-sharing Neuroimaging Initiative (INDI). To allow researchers to generate various estimates of reliability and reproducibility, a variety of data acquisition procedures and experimental designs are included. Similarly, to enable users to assess the impact of commonly encountered artifacts (for example, motion) on characterizations of inter-individual variation, datasets of varying quality are included. Nature Publishing Group 2014-12-09 /pmc/articles/PMC4421932/ /pubmed/25977800 http://dx.doi.org/10.1038/sdata.2014.49 Text en Copyright © 2014, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse.
spellingShingle Data Descriptor
Zuo, Xi-Nian
Anderson, Jeffrey S
Bellec, Pierre
Birn, Rasmus M
Biswal, Bharat B
Blautzik, Janusch
Breitner, John C.S
Buckner, Randy L
Calhoun, Vince D
Castellanos, F. Xavier
Chen, Antao
Chen, Bing
Chen, Jiangtao
Chen, Xu
Colcombe, Stanley J
Courtney, William
Craddock, R Cameron
Di Martino, Adriana
Dong, Hao-Ming
Fu, Xiaolan
Gong, Qiyong
Gorgolewski, Krzysztof J
Han, Ying
He, Ye
He, Yong
Ho, Erica
Holmes, Avram
Hou, Xiao-Hui
Huckins, Jeremy
Jiang, Tianzi
Jiang, Yi
Kelley, William
Kelly, Clare
King, Margaret
LaConte, Stephen M
Lainhart, Janet E
Lei, Xu
Li, Hui-Jie
Li, Kaiming
Li, Kuncheng
Lin, Qixiang
Liu, Dongqiang
Liu, Jia
Liu, Xun
Liu, Yijun
Lu, Guangming
Lu, Jie
Luna, Beatriz
Luo, Jing
Lurie, Daniel
Mao, Ying
Margulies, Daniel S
Mayer, Andrew R
Meindl, Thomas
Meyerand, Mary E
Nan, Weizhi
Nielsen, Jared A
O’Connor, David
Paulsen, David
Prabhakaran, Vivek
Qi, Zhigang
Qiu, Jiang
Shao, Chunhong
Shehzad, Zarrar
Tang, Weijun
Villringer, Arno
Wang, Huiling
Wang, Kai
Wei, Dongtao
Wei, Gao-Xia
Weng, Xu-Chu
Wu, Xuehai
Xu, Ting
Yang, Ning
Yang, Zhi
Zang, Yu-Feng
Zhang, Lei
Zhang, Qinglin
Zhang, Zhe
Zhang, Zhiqiang
Zhao, Ke
Zhen, Zonglei
Zhou, Yuan
Zhu, Xing-Ting
Milham, Michael P
An open science resource for establishing reliability and reproducibility in functional connectomics
title An open science resource for establishing reliability and reproducibility in functional connectomics
title_full An open science resource for establishing reliability and reproducibility in functional connectomics
title_fullStr An open science resource for establishing reliability and reproducibility in functional connectomics
title_full_unstemmed An open science resource for establishing reliability and reproducibility in functional connectomics
title_short An open science resource for establishing reliability and reproducibility in functional connectomics
title_sort open science resource for establishing reliability and reproducibility in functional connectomics
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4421932/
https://www.ncbi.nlm.nih.gov/pubmed/25977800
http://dx.doi.org/10.1038/sdata.2014.49
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AT zhouyuan openscienceresourceforestablishingreliabilityandreproducibilityinfunctionalconnectomics
AT zhuxingting openscienceresourceforestablishingreliabilityandreproducibilityinfunctionalconnectomics
AT milhammichaelp openscienceresourceforestablishingreliabilityandreproducibilityinfunctionalconnectomics