Cargando…

Genome-wide analysis of human global and transcription-coupled excision repair of UV damage at single-nucleotide resolution

We developed a method for genome-wide mapping of DNA excision repair named XR-seq (excision repair sequencing). Human nucleotide excision repair generates two incisions surrounding the site of damage, creating an ∼30-mer. In XR-seq, this fragment is isolated and subjected to high-throughput sequenci...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hu, Jinchuan, Adar, Sheera, Selby, Christopher P., Lieb, Jason D., Sancar, Aziz
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2015
Materias:	Research Paper
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4421983/ https://www.ncbi.nlm.nih.gov/pubmed/25934506 http://dx.doi.org/10.1101/gad.261271.115

Ejemplares similares

A new technique for genome-wide mapping of nucleotide excision repair without immunopurification of damaged DNA
por: Wu, Sizhong, et al.
Publicado: (2022)

Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns
por: Oztas, Onur, et al.
Publicado: (2018)

Genome-wide transcription-coupled repair in Escherichia coli is mediated by the Mfd translocase
por: Adebali, Ogun, et al.
Publicado: (2017)

Effects of replication domains on genome-wide UV-induced DNA damage and repair
por: Huang, Yanchao, et al.
Publicado: (2022)

Nucleotide excision repair: a versatile and smart toolkit: Nucleotide excision repair
por: Zhang, Xiping, et al.
Publicado: (2022)

Developmentally Regulated Oscillations in the Expression of UV Repair Genes in a Soilborne Plant Pathogen Dictate UV Repair Efficiency and Survival
por: Milo-Cochavi, Shira, et al.
Publicado: (2019)

Genome-wide analysis of 8-oxo-7,8-dihydro-2'-deoxyguanosine at single-nucleotide resolution unveils reduced occurrence of oxidative damage at G-quadruplex sites
por: An, Jiao, et al.
Publicado: (2021)

Highly specific and sensitive method for measuring nucleotide excision repair kinetics of ultraviolet photoproducts in human cells
por: Choi, Jun-Hyuk, et al.
Publicado: (2014)

Nucleotide Excision Repair of Aflatoxin-induced DNA Damage within the 3D Human Genome Organization
por: Wu, Yiran, et al.
Publicado: (2023)

Regulation of Nucleotide Excision Repair by UV-DDB: Prioritization of Damage Recognition to Internucleosomal DNA
por: Fei, Jia, et al.
Publicado: (2011)

Nucleotide excision repair removes thymidine analog 5-ethynyl-2′-deoxyuridine from the mammalian genome
por: Wang, Li, et al.
Publicado: (2022)

Regulation of nucleotide excision repair activity by transcriptional and post-transcriptional control of the XPA protein
por: Kang, Tae-Hong, et al.
Publicado: (2011)

Nucleotide Excision Repair and Transcription-coupled DNA Repair Abrogate the Impact of DNA Damage on Transcription
por: Nadkarni, Aditi, et al.
Publicado: (2016)

Global and transcription-coupled repair of 8-oxoG is initiated by nucleotide excision repair proteins
por: Kumar, Namrata, et al.
Publicado: (2022)

Exons and introns exhibit transcriptional strand asymmetry of dinucleotide distribution, damage formation and DNA repair
por: Heilbrun, Elisheva E, et al.
Publicado: (2021)

Nucleotide excision repair in Human cell lines lacking both XPC and CSB proteins
por: Lindsey-Boltz, Laura A, et al.
Publicado: (2023)

C. elegans survival assays to discern global and transcription-coupled nucleotide excision repair
por: van der Woude, Melanie, et al.
Publicado: (2021)

Phosphorylated HBO1 at UV irradiated sites is essential for nucleotide excision repair
por: Niida, Hiroyuki, et al.
Publicado: (2017)

Molecular Mechanism of Global Genome Nucleotide Excision Repair
por: Petruseva, I.O., et al.
Publicado: (2014)

Rpb7 represses transcription-coupled nucleotide excision repair
por: Gong, Wenzhi, et al.
Publicado: (2023)

Super hotspots and super coldspots in the repair of UV-induced DNA damage in the human genome
por: Jiang, Yuchao, et al.
Publicado: (2021)

Fluorescence detection of cellular nucleotide excision repair of damaged DNA
por: Toga, Tatsuya, et al.
Publicado: (2014)

Mechanism and regulation of DNA damage recognition in nucleotide excision repair
por: Kusakabe, Masayuki, et al.
Publicado: (2019)

Damage sensor role of UV-DDB during base excision repair
por: Jang, Sunbok, et al.
Publicado: (2019)

Detection of the Excised, Damage‐containing Oligonucleotide Products of Nucleotide Excision Repair in Human Cells
por: Song, Jimyeong, et al.
Publicado: (2016)

The AHR represses nucleotide excision repair and apoptosis and contributes to UV-induced skin carcinogenesis
por: Pollet, Marius, et al.
Publicado: (2018)

UvrD Participation in Nucleotide Excision Repair Is Required for the Recovery of DNA Synthesis following UV-Induced Damage in Escherichia coli
por: Newton, Kelley N., et al.
Publicado: (2012)

Functional impacts of the ubiquitin–proteasome system on DNA damage recognition in global genome nucleotide excision repair
por: Sakai, Wataru, et al.
Publicado: (2020)

A ubiquitylation site in Cockayne syndrome B required for repair of oxidative DNA damage, but not for transcription-coupled nucleotide excision repair
por: Ranes, Michael, et al.
Publicado: (2016)

Requirement of transcription-coupled nucleotide excision repair for the removal of a specific type of oxidatively induced DNA damage
por: Sarmini, Leen, et al.
Publicado: (2023)

Author Correction: Phosphorylated HBO1 at UV irradiated sites is essential for nucleotide excision repair
por: Niida, Hiroyuki, et al.
Publicado: (2018)

Alkylated DNA damage flipping bridges base and nucleotide excision repair
por: Tubbs, Julie L., et al.
Publicado: (2009)

The involvement of nucleotide excision repair proteins in the removal of oxidative DNA damage
por: Kumar, Namrata, et al.
Publicado: (2020)

Global-genome Nucleotide Excision Repair Controlled by Ubiquitin/Sumo Modifiers
por: Rüthemann, Peter, et al.
Publicado: (2016)

Enhancement of UV-induced nucleotide excision repair activity upon forskolin treatment is cell growth-dependent
por: Lee, Jeong-Min, et al.
Publicado: (2016)

Signaling Pathways, Chemical and Biological Modulators of Nucleotide Excision Repair: The Faithful Shield against UV Genotoxicity
por: Kobaisi, F., et al.
Publicado: (2019)

Nucleotide excision repair in Trypanosoma brucei: specialization of transcription-coupled repair due to multigenic transcription
por: Machado, Carlos R, et al.
Publicado: (2014)

Single-nucleotide and long-patch base excision repair of DNA damage in plants
por: Córdoba-Cañero, Dolores, et al.
Publicado: (2009)

The Role of Altered Nucleotide Excision Repair and UVB-Induced DNA Damage in Melanomagenesis
por: Budden, Timothy, et al.
Publicado: (2013)

Nucleotide Excision Repair in Caenorhabditis elegans
por: Lans, Hannes, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_cuiu29uo3j8ks3g4dd1ntr423j