CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization

CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any websi...

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Detalles Bibliográficos
Autores principales: Frias, Silvia, Bryan, Kenneth, Brinkman, Fiona S. L., Lynn, David J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Database Tool
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4423409/
https://www.ncbi.nlm.nih.gov/pubmed/25953080
http://dx.doi.org/10.1093/database/bav041
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author Frias, Silvia
Bryan, Kenneth
Brinkman, Fiona S. L.
Lynn, David J.
author_facet Frias, Silvia
Bryan, Kenneth
Brinkman, Fiona S. L.
Lynn, David J.
author_sort Frias, Silvia
collection PubMed
description CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any website and is configurable to support customized network visualization. CerebralWeb also supports the automatic retrieval of Cerebral-compatible localizations for human, mouse and bovine genes via a web service and enables the automated parsing of Cytoscape compatible XGMML network files. CerebralWeb currently supports embedded network visualization on the InnateDB (www.innatedb.com) and Allergy and Asthma Portal (allergen.innatedb.com) database and analysis resources. Database tool URL: http://www.innatedb.com/CerebralWeb
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spelling pubmed-44234092015-05-13 CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization Frias, Silvia Bryan, Kenneth Brinkman, Fiona S. L. Lynn, David J. Database (Oxford) Database Tool CerebralWeb is a light-weight JavaScript plug-in that extends Cytoscape.js to enable fast and interactive visualization of molecular interaction networks stratified based on subcellular localization or other user-supplied annotation. The application is designed to be easily integrated into any website and is configurable to support customized network visualization. CerebralWeb also supports the automatic retrieval of Cerebral-compatible localizations for human, mouse and bovine genes via a web service and enables the automated parsing of Cytoscape compatible XGMML network files. CerebralWeb currently supports embedded network visualization on the InnateDB (www.innatedb.com) and Allergy and Asthma Portal (allergen.innatedb.com) database and analysis resources. Database tool URL: http://www.innatedb.com/CerebralWeb Oxford University Press 2015-05-07 /pmc/articles/PMC4423409/ /pubmed/25953080 http://dx.doi.org/10.1093/database/bav041 Text en © The Author(s) 2015. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Frias, Silvia
Bryan, Kenneth
Brinkman, Fiona S. L.
Lynn, David J.
CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization
title CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization
title_full CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization
title_fullStr CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization
title_full_unstemmed CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization
title_short CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization
title_sort cerebralweb: a cytoscape.js plug-in to visualize networks stratified by subcellular localization
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4423409/
https://www.ncbi.nlm.nih.gov/pubmed/25953080
http://dx.doi.org/10.1093/database/bav041
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AT brinkmanfionasl cerebralwebacytoscapejsplugintovisualizenetworksstratifiedbysubcellularlocalization
AT lynndavidj cerebralwebacytoscapejsplugintovisualizenetworksstratifiedbysubcellularlocalization

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