Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride

An unknown fungus has been isolated as a contaminant of in vitro-grown fungal cultures. In an attempt to identify the contamination, we isolated the causal agent and performed whole-genome sequencing. BLAST analysis of the internal transcribed spacer (ITS) sequence against the NCBI database showed 1...

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Autores principales: Shi-Kunne, Xiaoqian, Seidl, Michael F., Faino, Luigi, Thomma, Bart P. H. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2015
Materias:
Eukaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4424285/
https://www.ncbi.nlm.nih.gov/pubmed/25953169
http://dx.doi.org/10.1128/genomeA.00287-15
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author Shi-Kunne, Xiaoqian
Seidl, Michael F.
Faino, Luigi
Thomma, Bart P. H. J.
author_facet Shi-Kunne, Xiaoqian
Seidl, Michael F.
Faino, Luigi
Thomma, Bart P. H. J.
author_sort Shi-Kunne, Xiaoqian
collection PubMed
description An unknown fungus has been isolated as a contaminant of in vitro-grown fungal cultures. In an attempt to identify the contamination, we isolated the causal agent and performed whole-genome sequencing. BLAST analysis of the internal transcribed spacer (ITS) sequence against the NCBI database showed 100% identity to Trichoderma atroviride, and further alignment of the genome assembly confirmed the unknown fungus to be T. atroviride. Here, we report the draft genome sequence of a T. atroviride strain.
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spelling pubmed-44242852015-05-15 Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride Shi-Kunne, Xiaoqian Seidl, Michael F. Faino, Luigi Thomma, Bart P. H. J. Genome Announc Eukaryotes An unknown fungus has been isolated as a contaminant of in vitro-grown fungal cultures. In an attempt to identify the contamination, we isolated the causal agent and performed whole-genome sequencing. BLAST analysis of the internal transcribed spacer (ITS) sequence against the NCBI database showed 100% identity to Trichoderma atroviride, and further alignment of the genome assembly confirmed the unknown fungus to be T. atroviride. Here, we report the draft genome sequence of a T. atroviride strain. American Society for Microbiology 2015-05-07 /pmc/articles/PMC4424285/ /pubmed/25953169 http://dx.doi.org/10.1128/genomeA.00287-15 Text en Copyright © 2015 Shi-Kunne et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license (http://creativecommons.org/licenses/by/3.0/) .
spellingShingle Eukaryotes
Shi-Kunne, Xiaoqian
Seidl, Michael F.
Faino, Luigi
Thomma, Bart P. H. J.
Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride
title Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride
title_full Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride
title_fullStr Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride
title_full_unstemmed Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride
title_short Draft Genome Sequence of a Strain of Cosmopolitan Fungus Trichoderma atroviride
title_sort draft genome sequence of a strain of cosmopolitan fungus trichoderma atroviride
topic Eukaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4424285/
https://www.ncbi.nlm.nih.gov/pubmed/25953169
http://dx.doi.org/10.1128/genomeA.00287-15
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