Cargando…

Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function

Establishment of phylogenetic relationships remains a challenging task because it is based on computational analysis of genomic hot spots that display species-specific sequence variations. Here, we identify a species-specific thymine-to-guanine sequence variation in the Glrb gene which gives rise to...

Descripción completa

Detalles Bibliográficos
Autores principales: Winkelmann, Aline, You, Xiantian, Grünewald, Nora, Häussler, Ute, Krestel, Heinz, Haas, Carola A., Schwarz, Günter, Chen, Wei, Meier, Jochen C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425505/
https://www.ncbi.nlm.nih.gov/pubmed/25955356
http://dx.doi.org/10.1371/journal.pone.0125413
_version_ 1782370493239656448
author Winkelmann, Aline
You, Xiantian
Grünewald, Nora
Häussler, Ute
Krestel, Heinz
Haas, Carola A.
Schwarz, Günter
Chen, Wei
Meier, Jochen C.
author_facet Winkelmann, Aline
You, Xiantian
Grünewald, Nora
Häussler, Ute
Krestel, Heinz
Haas, Carola A.
Schwarz, Günter
Chen, Wei
Meier, Jochen C.
author_sort Winkelmann, Aline
collection PubMed
description Establishment of phylogenetic relationships remains a challenging task because it is based on computational analysis of genomic hot spots that display species-specific sequence variations. Here, we identify a species-specific thymine-to-guanine sequence variation in the Glrb gene which gives rise to species-specific splice donor sites in the Glrb genes of mouse and bushbaby. The resulting splice insert in the receptor for the inhibitory neurotransmitter glycine (GlyR) conveys synaptic receptor clustering and specific association with a particular synaptic plasticity-related splice variant of the postsynaptic scaffold protein gephyrin. This study identifies a new genomic hot spot which contributes to phylogenetic diversification of protein function and advances our understanding of phylogenetic relationships.
format Online
Article
Text
id pubmed-4425505
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-44255052015-05-21 Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function Winkelmann, Aline You, Xiantian Grünewald, Nora Häussler, Ute Krestel, Heinz Haas, Carola A. Schwarz, Günter Chen, Wei Meier, Jochen C. PLoS One Research Article Establishment of phylogenetic relationships remains a challenging task because it is based on computational analysis of genomic hot spots that display species-specific sequence variations. Here, we identify a species-specific thymine-to-guanine sequence variation in the Glrb gene which gives rise to species-specific splice donor sites in the Glrb genes of mouse and bushbaby. The resulting splice insert in the receptor for the inhibitory neurotransmitter glycine (GlyR) conveys synaptic receptor clustering and specific association with a particular synaptic plasticity-related splice variant of the postsynaptic scaffold protein gephyrin. This study identifies a new genomic hot spot which contributes to phylogenetic diversification of protein function and advances our understanding of phylogenetic relationships. Public Library of Science 2015-05-08 /pmc/articles/PMC4425505/ /pubmed/25955356 http://dx.doi.org/10.1371/journal.pone.0125413 Text en © 2015 Winkelmann et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Winkelmann, Aline
You, Xiantian
Grünewald, Nora
Häussler, Ute
Krestel, Heinz
Haas, Carola A.
Schwarz, Günter
Chen, Wei
Meier, Jochen C.
Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function
title Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function
title_full Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function
title_fullStr Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function
title_full_unstemmed Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function
title_short Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function
title_sort identification of a new genomic hot spot of evolutionary diversification of protein function
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425505/
https://www.ncbi.nlm.nih.gov/pubmed/25955356
http://dx.doi.org/10.1371/journal.pone.0125413
work_keys_str_mv AT winkelmannaline identificationofanewgenomichotspotofevolutionarydiversificationofproteinfunction
AT youxiantian identificationofanewgenomichotspotofevolutionarydiversificationofproteinfunction
AT grunewaldnora identificationofanewgenomichotspotofevolutionarydiversificationofproteinfunction
AT hausslerute identificationofanewgenomichotspotofevolutionarydiversificationofproteinfunction
AT krestelheinz identificationofanewgenomichotspotofevolutionarydiversificationofproteinfunction
AT haascarolaa identificationofanewgenomichotspotofevolutionarydiversificationofproteinfunction
AT schwarzgunter identificationofanewgenomichotspotofevolutionarydiversificationofproteinfunction
AT chenwei identificationofanewgenomichotspotofevolutionarydiversificationofproteinfunction
AT meierjochenc identificationofanewgenomichotspotofevolutionarydiversificationofproteinfunction