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Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function
Establishment of phylogenetic relationships remains a challenging task because it is based on computational analysis of genomic hot spots that display species-specific sequence variations. Here, we identify a species-specific thymine-to-guanine sequence variation in the Glrb gene which gives rise to...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425505/ https://www.ncbi.nlm.nih.gov/pubmed/25955356 http://dx.doi.org/10.1371/journal.pone.0125413 |
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author | Winkelmann, Aline You, Xiantian Grünewald, Nora Häussler, Ute Krestel, Heinz Haas, Carola A. Schwarz, Günter Chen, Wei Meier, Jochen C. |
author_facet | Winkelmann, Aline You, Xiantian Grünewald, Nora Häussler, Ute Krestel, Heinz Haas, Carola A. Schwarz, Günter Chen, Wei Meier, Jochen C. |
author_sort | Winkelmann, Aline |
collection | PubMed |
description | Establishment of phylogenetic relationships remains a challenging task because it is based on computational analysis of genomic hot spots that display species-specific sequence variations. Here, we identify a species-specific thymine-to-guanine sequence variation in the Glrb gene which gives rise to species-specific splice donor sites in the Glrb genes of mouse and bushbaby. The resulting splice insert in the receptor for the inhibitory neurotransmitter glycine (GlyR) conveys synaptic receptor clustering and specific association with a particular synaptic plasticity-related splice variant of the postsynaptic scaffold protein gephyrin. This study identifies a new genomic hot spot which contributes to phylogenetic diversification of protein function and advances our understanding of phylogenetic relationships. |
format | Online Article Text |
id | pubmed-4425505 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-44255052015-05-21 Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function Winkelmann, Aline You, Xiantian Grünewald, Nora Häussler, Ute Krestel, Heinz Haas, Carola A. Schwarz, Günter Chen, Wei Meier, Jochen C. PLoS One Research Article Establishment of phylogenetic relationships remains a challenging task because it is based on computational analysis of genomic hot spots that display species-specific sequence variations. Here, we identify a species-specific thymine-to-guanine sequence variation in the Glrb gene which gives rise to species-specific splice donor sites in the Glrb genes of mouse and bushbaby. The resulting splice insert in the receptor for the inhibitory neurotransmitter glycine (GlyR) conveys synaptic receptor clustering and specific association with a particular synaptic plasticity-related splice variant of the postsynaptic scaffold protein gephyrin. This study identifies a new genomic hot spot which contributes to phylogenetic diversification of protein function and advances our understanding of phylogenetic relationships. Public Library of Science 2015-05-08 /pmc/articles/PMC4425505/ /pubmed/25955356 http://dx.doi.org/10.1371/journal.pone.0125413 Text en © 2015 Winkelmann et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Winkelmann, Aline You, Xiantian Grünewald, Nora Häussler, Ute Krestel, Heinz Haas, Carola A. Schwarz, Günter Chen, Wei Meier, Jochen C. Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function |
title | Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function |
title_full | Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function |
title_fullStr | Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function |
title_full_unstemmed | Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function |
title_short | Identification of a New Genomic Hot Spot of Evolutionary Diversification of Protein Function |
title_sort | identification of a new genomic hot spot of evolutionary diversification of protein function |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425505/ https://www.ncbi.nlm.nih.gov/pubmed/25955356 http://dx.doi.org/10.1371/journal.pone.0125413 |
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