Cargando…

Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer

BACKGROUND: Although Mycobacterium tuberculosis isolates are consisted of several different lineages and the epidemiology analyses are usually assessed relative to a particular reference genome, M. tuberculosis H37Rv, which might introduce some biased results. Those analyses are essentially based ge...

Descripción completa

Detalles Bibliográficos
Autores principales:	Okumura, Kayo, Kato, Masako, Kirikae, Teruo, Kayano, Mitsunori, Miyoshi-Akiyama, Tohru
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425900/ https://www.ncbi.nlm.nih.gov/pubmed/25879806 http://dx.doi.org/10.1186/s12864-015-1368-9

Ejemplares similares

Pathogenicity Induced by Invasive Infection of Streptococcus dysgalactiae subsp. equisimilis in a Mouse Model of Diabetes
por: Ogura, Kohei, et al.
Publicado: (2018)

Genetic diversity of Mycobacterium tuberculosis isolates from Tochigi prefecture, a local region of Japan
por: Mizukoshi, Fuminori, et al.
Publicado: (2017)

Molecular Epidemiology of Drug-Resistant Mycobacterium Tuberculosis in Japan
por: Mizukoshi, Fuminori, et al.
Publicado: (2021)

Complete genome sequencing and analysis of a Lancefield group G Streptococcus dysgalactiae subsp. equisimilis strain causing streptococcal toxic shock syndrome (STSS)
por: Shimomura, Yumi, et al.
Publicado: (2011)

Evolutionary paths of streptococcal and staphylococcal superantigens
por: Okumura, Kayo, et al.
Publicado: (2012)

Complete Genome Sequence of Streptococcus dysgalactiae subsp. equisimilis 167 Carrying Lancefield Group C Antigen and Comparative Genomics of S. dysgalactiae subsp. equisimilis Strains
por: Watanabe, Shinya, et al.
Publicado: (2013)

Complete Genome Sequence and Comparative Genomics of a Streptococcus pyogenes emm3 Strain M3-b isolated from a Japanese Patient with Streptococcal Toxic Shock Syndrome
por: Ogura, Kohei, et al.
Publicado: (2017)

Development of Duplex PCR Assay for Detection and Differentiation of Typical and Atypical Melissococcus plutonius strains
por: ARAI, Rie, et al.
Publicado: (2013)

Multilocus Sequence Typing (MLST) for Characterization of Enterobacter cloacae
por: Miyoshi-Akiyama, Tohru, et al.
Publicado: (2013)

NDM-1 Metallo-β-Lactamase and ArmA 16S rRNA methylase producing Providencia rettgeri clinical isolates in Nepal
por: Tada, Tatsuya, et al.
Publicado: (2014)

Next-Generation Sequencing of Mycobacterium tuberculosis
por: Mokrousov, Igor, et al.
Publicado: (2016)

A Carbapenem-Resistant Pseudomonas aeruginosa Isolate Harboring Two Copies of bla(IMP-34) Encoding a Metallo-β-Lactamase
por: Tada, Tatsuya, et al.
Publicado: (2016)

Dissemination of clonal complex 2 Acinetobacter baumannii strains co-producing carbapenemases and 16S rRNA methylase ArmA in Vietnam
por: Tada, Tatsuya, et al.
Publicado: (2015)

Serial Histopathological Examination of the Lungs of Mice Infected with Influenza A Virus PR8 Strain
por: Fukushi, Masaya, et al.
Publicado: (2011)

Application of Metagenomic Next-Generation Sequencing in Mycobacterium tuberculosis Infection
por: Li, Yaoguang, et al.
Publicado: (2022)

Genetic markers, genotyping methods & next generation sequencing in Mycobacterium tuberculosis
por: Desikan, Srinidhi, et al.
Publicado: (2015)

Mycobacterium tuberculosis Next-Generation Whole Genome Sequencing: Opportunities and Challenges
por: Iketleng, Thato, et al.
Publicado: (2018)

Emergence and Spread of Epidemic Multidrug-Resistant Pseudomonas aeruginosa
por: Miyoshi-Akiyama, Tohru, et al.
Publicado: (2017)

Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis
por: Tyler, Andrea D., et al.
Publicado: (2016)

Comparative Genome Analysis of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Sequence Type 131 Strains from Nepal and Japan
por: Miyoshi-Akiyama, Tohru, et al.
Publicado: (2016)

Correction for Miyoshi-Akiyama et al., “Comparative Genome Analysis of Extended-Spectrum-β-Lactamase-Producing Escherichia coli Sequence Type 131 Strains from Nepal and Japan”
por: Miyoshi-Akiyama, Tohru, et al.
Publicado: (2017)

A multilocus sequence typing scheme of Pseudomonas putida for clinical and environmental isolates
por: Ogura, Kohei, et al.
Publicado: (2019)

Metagenomic next-generation sequencing for Mycobacterium tuberculosis complex detection: a meta-analysis
por: Li, Yulian, et al.
Publicado: (2023)

Direct detection of drug-resistant Mycobacterium tuberculosis using targeted next generation sequencing
por: Murphy, Shannon G., et al.
Publicado: (2023)

Construction of an overexpression library for Mycobacterium tuberculosis
por: Melief, Eduard, et al.
Publicado: (2018)

Next-Generation Sequencing-Based Molecular Diagnosis of Choroideremia
por: Shimizu, Kayo, et al.
Publicado: (2015)

Dissection and identification of regions required to form pseudoparticles by the interaction between the nucleocapsid (N) and membrane (M) proteins of SARS coronavirus
por: Hatakeyama, Seisuke, et al.
Publicado: (2008)

The performance of detecting Mycobacterium tuberculosis complex in lung biopsy tissue by metagenomic next-generation sequencing
por: Fu, Meng, et al.
Publicado: (2022)

Enriched bovine IgG fraction prevents infections with Enterohaemorrhagic Escherichia coli O157:H7, Salmonella enterica serovar Enteritidis, and Mycobacterium avium
por: Funatogawa, Keiji, et al.
Publicado: (2019)

Application of next-generation sequencing to detect variants of drug-resistant Mycobacterium tuberculosis: genotype–phenotype correlation
por: Ko, Dae-Hyun, et al.
Publicado: (2019)

BCG‐induced protection against Mycobacterium tuberculosis infection: Evidence, mechanisms, and implications for next‐generation vaccines
por: Foster, Mitchell, et al.
Publicado: (2021)

Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm
por: Azé, Jérôme, et al.
Publicado: (2015)

Evaluation of an Automated Rapid Diagnostic Assay for Detection of Gram-Negative Bacteria and Their Drug-Resistance Genes in Positive Blood Cultures
por: Tojo, Masayoshi, et al.
Publicado: (2014)

A67 Use of next-generation whole-genome sequencing to understand drug-resistant Mycobacterium tuberculosis in Botswana
por: Iketleng, T, et al.
Publicado: (2018)

Updating the WHO target product profile for next-generation Mycobacterium tuberculosis drug susceptibility testing at peripheral centres
por: MacLean, Emily Lai-Ho, et al.
Publicado: (2023)

Virtual Terminator nucleotides for next generation DNA sequencing
por: Bowers, Jayson, et al.
Publicado: (2009)

Consensus Rules in Variant Detection from Next-Generation Sequencing Data
por: Jia, Peilin, et al.
Publicado: (2012)

Next-generation sequencing library construction on a surface
por: Feng, Kuan, et al.
Publicado: (2018)

Characterizing the molecular composition and diagnostic potential of Mycobacterium tuberculosis urinary cell-free DNA using next-generation sequencing
por: Oreskovic, Amy, et al.
Publicado: (2021)

Construction and application of a co-expression network in Mycobacterium tuberculosis
por: Jiang, Jun, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_e0vqn1k241o9jo5oftep697qc2