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The conformation of enkephalin bound to its receptor: an “elusive goal” becoming reality

The availability of solid state structures of opioid receptors has prompted us to reconsider a crucial question concerning bioactive peptides: can their conformation be studied without any knowledge of the structure of their receptors? The possibility of giving a meaningful answer to this query rest...

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Detalles Bibliográficos
Autores principales: Sanfelice, Domenico, Temussi, Piero A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4428452/
https://www.ncbi.nlm.nih.gov/pubmed/25988155
http://dx.doi.org/10.3389/fmolb.2014.00014
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author Sanfelice, Domenico
Temussi, Piero A.
author_facet Sanfelice, Domenico
Temussi, Piero A.
author_sort Sanfelice, Domenico
collection PubMed
description The availability of solid state structures of opioid receptors has prompted us to reconsider a crucial question concerning bioactive peptides: can their conformation be studied without any knowledge of the structure of their receptors? The possibility of giving a meaningful answer to this query rests ultimately on the ease of dealing with the flexibility of bioactive peptides, and amongst them one of the most flexible bioactive peptides, enkephalin. All solution studies of enkephalin hint at an inextricable mixture of quasi isoenergetic conformers. In this study we refer to the only NMR work that yielded inter-residue NOEs, performed at very low temperature. In the present work, we have used the simplest possible docking methods to check the consistency of the main conformers of enkephalin with the steric requirements of the active site of the receptor, as provided by the crystal structure of its complex with naltrindole, a rigid antagonist. We show that the conformers found in the equilibrium mixture at low temperature are indeed compatible with a good fit to the receptor active site. The possible uncertainties linked to the different behavior of agonists and antagonists do not diminish the relevance of the finding.
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spelling pubmed-44284522015-05-18 The conformation of enkephalin bound to its receptor: an “elusive goal” becoming reality Sanfelice, Domenico Temussi, Piero A. Front Mol Biosci Molecular Biosciences The availability of solid state structures of opioid receptors has prompted us to reconsider a crucial question concerning bioactive peptides: can their conformation be studied without any knowledge of the structure of their receptors? The possibility of giving a meaningful answer to this query rests ultimately on the ease of dealing with the flexibility of bioactive peptides, and amongst them one of the most flexible bioactive peptides, enkephalin. All solution studies of enkephalin hint at an inextricable mixture of quasi isoenergetic conformers. In this study we refer to the only NMR work that yielded inter-residue NOEs, performed at very low temperature. In the present work, we have used the simplest possible docking methods to check the consistency of the main conformers of enkephalin with the steric requirements of the active site of the receptor, as provided by the crystal structure of its complex with naltrindole, a rigid antagonist. We show that the conformers found in the equilibrium mixture at low temperature are indeed compatible with a good fit to the receptor active site. The possible uncertainties linked to the different behavior of agonists and antagonists do not diminish the relevance of the finding. Frontiers Media S.A. 2014-10-07 /pmc/articles/PMC4428452/ /pubmed/25988155 http://dx.doi.org/10.3389/fmolb.2014.00014 Text en Copyright © 2014 Sanfelice and Temussi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Sanfelice, Domenico
Temussi, Piero A.
The conformation of enkephalin bound to its receptor: an “elusive goal” becoming reality
title The conformation of enkephalin bound to its receptor: an “elusive goal” becoming reality
title_full The conformation of enkephalin bound to its receptor: an “elusive goal” becoming reality
title_fullStr The conformation of enkephalin bound to its receptor: an “elusive goal” becoming reality
title_full_unstemmed The conformation of enkephalin bound to its receptor: an “elusive goal” becoming reality
title_short The conformation of enkephalin bound to its receptor: an “elusive goal” becoming reality
title_sort conformation of enkephalin bound to its receptor: an “elusive goal” becoming reality
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4428452/
https://www.ncbi.nlm.nih.gov/pubmed/25988155
http://dx.doi.org/10.3389/fmolb.2014.00014
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