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Luscus: molecular viewer and editor for MOLCAS
The novel program for graphical display and editing of molecular systems, luscus, is described. The program allows fast and easy building and/or editing different molecular structures, up to several thousands of atoms large. Luscus is able to visualise dipole moments, normal modes, molecular orbital...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432095/ https://www.ncbi.nlm.nih.gov/pubmed/25984240 http://dx.doi.org/10.1186/s13321-015-0060-z |
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author | Kovačević, Goran Veryazov, Valera |
author_facet | Kovačević, Goran Veryazov, Valera |
author_sort | Kovačević, Goran |
collection | PubMed |
description | The novel program for graphical display and editing of molecular systems, luscus, is described. The program allows fast and easy building and/or editing different molecular structures, up to several thousands of atoms large. Luscus is able to visualise dipole moments, normal modes, molecular orbitals, electron densities and electrostatic potentials. In addition, simple geometrical objects can be rendered in order to reveal a geometrical feature or a physical quantity. The program is developed as a graphical interface for the MOLCAS program package, however its adaptive nature makes possible to use luscus with other computational program packages and chemical formats. All data files are opened via simple plug-ins which makes easy to implement a new file format in luscus. The easiness of editing molecular geometries makes luscus suitable for teaching students chemical concepts and molecular modelling. [Figure: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13321-015-0060-z) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4432095 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-44320952015-05-16 Luscus: molecular viewer and editor for MOLCAS Kovačević, Goran Veryazov, Valera J Cheminform Software The novel program for graphical display and editing of molecular systems, luscus, is described. The program allows fast and easy building and/or editing different molecular structures, up to several thousands of atoms large. Luscus is able to visualise dipole moments, normal modes, molecular orbitals, electron densities and electrostatic potentials. In addition, simple geometrical objects can be rendered in order to reveal a geometrical feature or a physical quantity. The program is developed as a graphical interface for the MOLCAS program package, however its adaptive nature makes possible to use luscus with other computational program packages and chemical formats. All data files are opened via simple plug-ins which makes easy to implement a new file format in luscus. The easiness of editing molecular geometries makes luscus suitable for teaching students chemical concepts and molecular modelling. [Figure: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13321-015-0060-z) contains supplementary material, which is available to authorized users. Springer International Publishing 2015-04-29 /pmc/articles/PMC4432095/ /pubmed/25984240 http://dx.doi.org/10.1186/s13321-015-0060-z Text en © Kovačević and Veryazov; licensee Springer. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Software Kovačević, Goran Veryazov, Valera Luscus: molecular viewer and editor for MOLCAS |
title | Luscus: molecular viewer and editor for MOLCAS |
title_full | Luscus: molecular viewer and editor for MOLCAS |
title_fullStr | Luscus: molecular viewer and editor for MOLCAS |
title_full_unstemmed | Luscus: molecular viewer and editor for MOLCAS |
title_short | Luscus: molecular viewer and editor for MOLCAS |
title_sort | luscus: molecular viewer and editor for molcas |
topic | Software |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432095/ https://www.ncbi.nlm.nih.gov/pubmed/25984240 http://dx.doi.org/10.1186/s13321-015-0060-z |
work_keys_str_mv | AT kovacevicgoran luscusmolecularviewerandeditorformolcas AT veryazovvalera luscusmolecularviewerandeditorformolcas |