Cargando…
Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems
BACKGROUND: Rapid, accurate and high-throughput identification of vector arthropods is of paramount importance in surveillance programmes that are becoming more common due to the changing geographic occurrence and extent of many arthropod-borne diseases. Protein profiling by MALDI-TOF mass spectrome...
Autores principales: | , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432514/ https://www.ncbi.nlm.nih.gov/pubmed/25957576 http://dx.doi.org/10.1186/s13071-015-0878-2 |
_version_ | 1782371492111056896 |
---|---|
author | Mathis, Alexander Depaquit, Jérôme Dvořák, Vit Tuten, Holly Bañuls, Anne-Laure Halada, Petr Zapata, Sonia Lehrter, Véronique Hlavačková, Kristýna Prudhomme, Jorian Volf, Petr Sereno, Denis Kaufmann, Christian Pflüger, Valentin Schaffner, Francis |
author_facet | Mathis, Alexander Depaquit, Jérôme Dvořák, Vit Tuten, Holly Bañuls, Anne-Laure Halada, Petr Zapata, Sonia Lehrter, Véronique Hlavačková, Kristýna Prudhomme, Jorian Volf, Petr Sereno, Denis Kaufmann, Christian Pflüger, Valentin Schaffner, Francis |
author_sort | Mathis, Alexander |
collection | PubMed |
description | BACKGROUND: Rapid, accurate and high-throughput identification of vector arthropods is of paramount importance in surveillance programmes that are becoming more common due to the changing geographic occurrence and extent of many arthropod-borne diseases. Protein profiling by MALDI-TOF mass spectrometry fulfils these requirements for identification, and reference databases have recently been established for several vector taxa, mostly with specimens from laboratory colonies. METHODS: We established and validated a reference database containing 20 phlebotomine sand fly (Diptera: Psychodidae, Phlebotominae) species by using specimens from colonies or field-collections that had been stored for various periods of time. RESULTS: Identical biomarker mass patterns (‘superspectra’) were obtained with colony- or field-derived specimens of the same species. In the validation study, high quality spectra (i.e. more than 30 evaluable masses) were obtained with all fresh insects from colonies, and with 55/59 insects deep-frozen (liquid nitrogen/-80 °C) for up to 25 years. In contrast, only 36/52 specimens stored in ethanol could be identified. This resulted in an overall sensitivity of 87 % (140/161); specificity was 100 %. Duration of storage impaired data counts in the high mass range, and thus cluster analyses of closely related specimens might reflect their storage conditions rather than phenotypic distinctness. A major drawback of MALDI-TOF MS is the restricted availability of in-house databases and the fact that mass spectrometers from 2 companies (Bruker, Shimadzu) are widely being used. We have analysed fingerprints of phlebotomine sand flies obtained by automatic routine procedure on a Bruker instrument by using our database and the software established on a Shimadzu system. The sensitivity with 312 specimens from 8 sand fly species from laboratory colonies when evaluating only high quality spectra was 98.3 %; the specificity was 100 %. The corresponding diagnostic values with 55 field-collected specimens from 4 species were 94.7 % and 97.4 %, respectively. CONCLUSIONS: A centralized high-quality database (created by expert taxonomists and experienced users of mass spectrometers) that is easily amenable to customer-oriented identification services is a highly desirable resource. As shown in the present work, spectra obtained from different specimens with different instruments can be analysed using a centralized database, which should be available in the near future via an online platform in a cost-efficient manner. |
format | Online Article Text |
id | pubmed-4432514 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-44325142015-05-16 Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems Mathis, Alexander Depaquit, Jérôme Dvořák, Vit Tuten, Holly Bañuls, Anne-Laure Halada, Petr Zapata, Sonia Lehrter, Véronique Hlavačková, Kristýna Prudhomme, Jorian Volf, Petr Sereno, Denis Kaufmann, Christian Pflüger, Valentin Schaffner, Francis Parasit Vectors Research BACKGROUND: Rapid, accurate and high-throughput identification of vector arthropods is of paramount importance in surveillance programmes that are becoming more common due to the changing geographic occurrence and extent of many arthropod-borne diseases. Protein profiling by MALDI-TOF mass spectrometry fulfils these requirements for identification, and reference databases have recently been established for several vector taxa, mostly with specimens from laboratory colonies. METHODS: We established and validated a reference database containing 20 phlebotomine sand fly (Diptera: Psychodidae, Phlebotominae) species by using specimens from colonies or field-collections that had been stored for various periods of time. RESULTS: Identical biomarker mass patterns (‘superspectra’) were obtained with colony- or field-derived specimens of the same species. In the validation study, high quality spectra (i.e. more than 30 evaluable masses) were obtained with all fresh insects from colonies, and with 55/59 insects deep-frozen (liquid nitrogen/-80 °C) for up to 25 years. In contrast, only 36/52 specimens stored in ethanol could be identified. This resulted in an overall sensitivity of 87 % (140/161); specificity was 100 %. Duration of storage impaired data counts in the high mass range, and thus cluster analyses of closely related specimens might reflect their storage conditions rather than phenotypic distinctness. A major drawback of MALDI-TOF MS is the restricted availability of in-house databases and the fact that mass spectrometers from 2 companies (Bruker, Shimadzu) are widely being used. We have analysed fingerprints of phlebotomine sand flies obtained by automatic routine procedure on a Bruker instrument by using our database and the software established on a Shimadzu system. The sensitivity with 312 specimens from 8 sand fly species from laboratory colonies when evaluating only high quality spectra was 98.3 %; the specificity was 100 %. The corresponding diagnostic values with 55 field-collected specimens from 4 species were 94.7 % and 97.4 %, respectively. CONCLUSIONS: A centralized high-quality database (created by expert taxonomists and experienced users of mass spectrometers) that is easily amenable to customer-oriented identification services is a highly desirable resource. As shown in the present work, spectra obtained from different specimens with different instruments can be analysed using a centralized database, which should be available in the near future via an online platform in a cost-efficient manner. BioMed Central 2015-05-10 /pmc/articles/PMC4432514/ /pubmed/25957576 http://dx.doi.org/10.1186/s13071-015-0878-2 Text en © Mathis et al.; licensee BioMed Central. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0) which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Mathis, Alexander Depaquit, Jérôme Dvořák, Vit Tuten, Holly Bañuls, Anne-Laure Halada, Petr Zapata, Sonia Lehrter, Véronique Hlavačková, Kristýna Prudhomme, Jorian Volf, Petr Sereno, Denis Kaufmann, Christian Pflüger, Valentin Schaffner, Francis Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems |
title | Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems |
title_full | Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems |
title_fullStr | Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems |
title_full_unstemmed | Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems |
title_short | Identification of phlebotomine sand flies using one MALDI-TOF MS reference database and two mass spectrometer systems |
title_sort | identification of phlebotomine sand flies using one maldi-tof ms reference database and two mass spectrometer systems |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4432514/ https://www.ncbi.nlm.nih.gov/pubmed/25957576 http://dx.doi.org/10.1186/s13071-015-0878-2 |
work_keys_str_mv | AT mathisalexander identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT depaquitjerome identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT dvorakvit identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT tutenholly identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT banulsannelaure identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT haladapetr identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT zapatasonia identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT lehrterveronique identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT hlavackovakristyna identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT prudhommejorian identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT volfpetr identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT serenodenis identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT kaufmannchristian identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT pflugervalentin identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems AT schaffnerfrancis identificationofphlebotominesandfliesusingonemalditofmsreferencedatabaseandtwomassspectrometersystems |