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DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species
Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide. A number of genes involved in drought stress response have already been characterized, mainly in the model species Arabidopsis thaliana and Ory...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433318/ https://www.ncbi.nlm.nih.gov/pubmed/25979979 http://dx.doi.org/10.1093/database/bav046 |
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author | Alter, Svenja Bader, Kai C. Spannagl, Manuel Wang, Yu Bauer, Eva Schön, Chris-Carolin Mayer, Klaus F. X. |
author_facet | Alter, Svenja Bader, Kai C. Spannagl, Manuel Wang, Yu Bauer, Eva Schön, Chris-Carolin Mayer, Klaus F. X. |
author_sort | Alter, Svenja |
collection | PubMed |
description | Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide. A number of genes involved in drought stress response have already been characterized, mainly in the model species Arabidopsis thaliana and Oryza sativa. However, with the aim to produce drought tolerant crop varieties, it is of importance to identify the respective orthologs for each species. We have developed DroughtDB, a manually curated compilation of molecularly characterized genes that are involved in drought stress response. DroughtDB includes information about the originally identified gene, its physiological and/or molecular function and mutant phenotypes and provides detailed information about computed orthologous genes in nine model and crop plant species including maize and barley. All identified orthologs are interlinked with the respective reference entry in MIPS/PGSB PlantsDB, which allows retrieval of additional information like genome context and sequence information. Thus, DroughtDB is a valuable resource and information tool for researchers working on drought stress and will facilitate the identification, analysis and characterization of genes involved in drought stress tolerance in agriculturally important crop plants. Database URL: http://pgsb.helmholtz-muenchen.de/droughtdb/ |
format | Online Article Text |
id | pubmed-4433318 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-44333182015-05-28 DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species Alter, Svenja Bader, Kai C. Spannagl, Manuel Wang, Yu Bauer, Eva Schön, Chris-Carolin Mayer, Klaus F. X. Database (Oxford) Database Tool Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide. A number of genes involved in drought stress response have already been characterized, mainly in the model species Arabidopsis thaliana and Oryza sativa. However, with the aim to produce drought tolerant crop varieties, it is of importance to identify the respective orthologs for each species. We have developed DroughtDB, a manually curated compilation of molecularly characterized genes that are involved in drought stress response. DroughtDB includes information about the originally identified gene, its physiological and/or molecular function and mutant phenotypes and provides detailed information about computed orthologous genes in nine model and crop plant species including maize and barley. All identified orthologs are interlinked with the respective reference entry in MIPS/PGSB PlantsDB, which allows retrieval of additional information like genome context and sequence information. Thus, DroughtDB is a valuable resource and information tool for researchers working on drought stress and will facilitate the identification, analysis and characterization of genes involved in drought stress tolerance in agriculturally important crop plants. Database URL: http://pgsb.helmholtz-muenchen.de/droughtdb/ Oxford University Press 2015-05-15 /pmc/articles/PMC4433318/ /pubmed/25979979 http://dx.doi.org/10.1093/database/bav046 Text en © The Author(s) 2015. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Tool Alter, Svenja Bader, Kai C. Spannagl, Manuel Wang, Yu Bauer, Eva Schön, Chris-Carolin Mayer, Klaus F. X. DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species |
title | DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species |
title_full | DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species |
title_fullStr | DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species |
title_full_unstemmed | DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species |
title_short | DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species |
title_sort | droughtdb: an expert-curated compilation of plant drought stress genes and their homologs in nine species |
topic | Database Tool |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433318/ https://www.ncbi.nlm.nih.gov/pubmed/25979979 http://dx.doi.org/10.1093/database/bav046 |
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