Cargando…

DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species

Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide. A number of genes involved in drought stress response have already been characterized, mainly in the model species Arabidopsis thaliana and Ory...

Descripción completa

Detalles Bibliográficos
Autores principales: Alter, Svenja, Bader, Kai C., Spannagl, Manuel, Wang, Yu, Bauer, Eva, Schön, Chris-Carolin, Mayer, Klaus F. X.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433318/
https://www.ncbi.nlm.nih.gov/pubmed/25979979
http://dx.doi.org/10.1093/database/bav046
_version_ 1782371625241411584
author Alter, Svenja
Bader, Kai C.
Spannagl, Manuel
Wang, Yu
Bauer, Eva
Schön, Chris-Carolin
Mayer, Klaus F. X.
author_facet Alter, Svenja
Bader, Kai C.
Spannagl, Manuel
Wang, Yu
Bauer, Eva
Schön, Chris-Carolin
Mayer, Klaus F. X.
author_sort Alter, Svenja
collection PubMed
description Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide. A number of genes involved in drought stress response have already been characterized, mainly in the model species Arabidopsis thaliana and Oryza sativa. However, with the aim to produce drought tolerant crop varieties, it is of importance to identify the respective orthologs for each species. We have developed DroughtDB, a manually curated compilation of molecularly characterized genes that are involved in drought stress response. DroughtDB includes information about the originally identified gene, its physiological and/or molecular function and mutant phenotypes and provides detailed information about computed orthologous genes in nine model and crop plant species including maize and barley. All identified orthologs are interlinked with the respective reference entry in MIPS/PGSB PlantsDB, which allows retrieval of additional information like genome context and sequence information. Thus, DroughtDB is a valuable resource and information tool for researchers working on drought stress and will facilitate the identification, analysis and characterization of genes involved in drought stress tolerance in agriculturally important crop plants. Database URL: http://pgsb.helmholtz-muenchen.de/droughtdb/
format Online
Article
Text
id pubmed-4433318
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-44333182015-05-28 DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species Alter, Svenja Bader, Kai C. Spannagl, Manuel Wang, Yu Bauer, Eva Schön, Chris-Carolin Mayer, Klaus F. X. Database (Oxford) Database Tool Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide. A number of genes involved in drought stress response have already been characterized, mainly in the model species Arabidopsis thaliana and Oryza sativa. However, with the aim to produce drought tolerant crop varieties, it is of importance to identify the respective orthologs for each species. We have developed DroughtDB, a manually curated compilation of molecularly characterized genes that are involved in drought stress response. DroughtDB includes information about the originally identified gene, its physiological and/or molecular function and mutant phenotypes and provides detailed information about computed orthologous genes in nine model and crop plant species including maize and barley. All identified orthologs are interlinked with the respective reference entry in MIPS/PGSB PlantsDB, which allows retrieval of additional information like genome context and sequence information. Thus, DroughtDB is a valuable resource and information tool for researchers working on drought stress and will facilitate the identification, analysis and characterization of genes involved in drought stress tolerance in agriculturally important crop plants. Database URL: http://pgsb.helmholtz-muenchen.de/droughtdb/ Oxford University Press 2015-05-15 /pmc/articles/PMC4433318/ /pubmed/25979979 http://dx.doi.org/10.1093/database/bav046 Text en © The Author(s) 2015. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Alter, Svenja
Bader, Kai C.
Spannagl, Manuel
Wang, Yu
Bauer, Eva
Schön, Chris-Carolin
Mayer, Klaus F. X.
DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species
title DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species
title_full DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species
title_fullStr DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species
title_full_unstemmed DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species
title_short DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species
title_sort droughtdb: an expert-curated compilation of plant drought stress genes and their homologs in nine species
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433318/
https://www.ncbi.nlm.nih.gov/pubmed/25979979
http://dx.doi.org/10.1093/database/bav046
work_keys_str_mv AT altersvenja droughtdbanexpertcuratedcompilationofplantdroughtstressgenesandtheirhomologsinninespecies
AT baderkaic droughtdbanexpertcuratedcompilationofplantdroughtstressgenesandtheirhomologsinninespecies
AT spannaglmanuel droughtdbanexpertcuratedcompilationofplantdroughtstressgenesandtheirhomologsinninespecies
AT wangyu droughtdbanexpertcuratedcompilationofplantdroughtstressgenesandtheirhomologsinninespecies
AT bauereva droughtdbanexpertcuratedcompilationofplantdroughtstressgenesandtheirhomologsinninespecies
AT schonchriscarolin droughtdbanexpertcuratedcompilationofplantdroughtstressgenesandtheirhomologsinninespecies
AT mayerklausfx droughtdbanexpertcuratedcompilationofplantdroughtstressgenesandtheirhomologsinninespecies