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The TF-miRNA Coregulation Network in Oral Lichen Planus

Oral lichen planus (OLP) is a chronic inflammatory disease that affects oral mucosa, some of which may finally develop into oral squamous cell carcinoma. Therefore, pinpointing the molecular mechanisms underlying the pathogenesis of OLP is important to develop efficient treatments for OLP. Recently,...

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Detalles Bibliográficos
Autores principales: Zuo, Yu-Ling, Gong, Di-Ping, Li, Bi-Ze, Zhao, Juan, Zhou, Ling-Yue, Shao, Fang-Yang, Jin, Zhao, He, Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433662/
https://www.ncbi.nlm.nih.gov/pubmed/26064947
http://dx.doi.org/10.1155/2015/731264
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author Zuo, Yu-Ling
Gong, Di-Ping
Li, Bi-Ze
Zhao, Juan
Zhou, Ling-Yue
Shao, Fang-Yang
Jin, Zhao
He, Yuan
author_facet Zuo, Yu-Ling
Gong, Di-Ping
Li, Bi-Ze
Zhao, Juan
Zhou, Ling-Yue
Shao, Fang-Yang
Jin, Zhao
He, Yuan
author_sort Zuo, Yu-Ling
collection PubMed
description Oral lichen planus (OLP) is a chronic inflammatory disease that affects oral mucosa, some of which may finally develop into oral squamous cell carcinoma. Therefore, pinpointing the molecular mechanisms underlying the pathogenesis of OLP is important to develop efficient treatments for OLP. Recently, the accumulation of the large amount of omics data, especially transcriptome data, provides opportunities to investigate OLPs from a systematic perspective. In this paper, assuming that the OLP associated genes have functional relationships, we present a new approach to identify OLP related gene modules from gene regulatory networks. In particular, we find that the gene modules regulated by both transcription factors (TFs) and microRNAs (miRNAs) play important roles in the pathogenesis of OLP and many genes in the modules have been reported to be related to OLP in the literature.
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spelling pubmed-44336622015-06-10 The TF-miRNA Coregulation Network in Oral Lichen Planus Zuo, Yu-Ling Gong, Di-Ping Li, Bi-Ze Zhao, Juan Zhou, Ling-Yue Shao, Fang-Yang Jin, Zhao He, Yuan Biomed Res Int Research Article Oral lichen planus (OLP) is a chronic inflammatory disease that affects oral mucosa, some of which may finally develop into oral squamous cell carcinoma. Therefore, pinpointing the molecular mechanisms underlying the pathogenesis of OLP is important to develop efficient treatments for OLP. Recently, the accumulation of the large amount of omics data, especially transcriptome data, provides opportunities to investigate OLPs from a systematic perspective. In this paper, assuming that the OLP associated genes have functional relationships, we present a new approach to identify OLP related gene modules from gene regulatory networks. In particular, we find that the gene modules regulated by both transcription factors (TFs) and microRNAs (miRNAs) play important roles in the pathogenesis of OLP and many genes in the modules have been reported to be related to OLP in the literature. Hindawi Publishing Corporation 2015 2015-05-03 /pmc/articles/PMC4433662/ /pubmed/26064947 http://dx.doi.org/10.1155/2015/731264 Text en Copyright © 2015 Yu-Ling Zuo et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zuo, Yu-Ling
Gong, Di-Ping
Li, Bi-Ze
Zhao, Juan
Zhou, Ling-Yue
Shao, Fang-Yang
Jin, Zhao
He, Yuan
The TF-miRNA Coregulation Network in Oral Lichen Planus
title The TF-miRNA Coregulation Network in Oral Lichen Planus
title_full The TF-miRNA Coregulation Network in Oral Lichen Planus
title_fullStr The TF-miRNA Coregulation Network in Oral Lichen Planus
title_full_unstemmed The TF-miRNA Coregulation Network in Oral Lichen Planus
title_short The TF-miRNA Coregulation Network in Oral Lichen Planus
title_sort tf-mirna coregulation network in oral lichen planus
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433662/
https://www.ncbi.nlm.nih.gov/pubmed/26064947
http://dx.doi.org/10.1155/2015/731264
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