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A simple method for RNA isolation from various tissues of the tree Neolamarckia cadamba

Plant tissues contain abundant polysaccharides, phenolic compounds and other metabolites, which makes it difficult to isolate high-quality RNA from them. In addition, Neolamarckia cadamba contains large quantities of other components, particularly RNA-binding alkaloids, which makes the isolation eve...

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Detalles Bibliográficos
Autores principales: Ouyang, Kunxi, Li, Juncheng, Huang, Hao, Que, Qingmin, Li, Pei, Chen, Xiaoyang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4434054/
https://www.ncbi.nlm.nih.gov/pubmed/26019587
http://dx.doi.org/10.1080/13102818.2014.981086
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author Ouyang, Kunxi
Li, Juncheng
Huang, Hao
Que, Qingmin
Li, Pei
Chen, Xiaoyang
author_facet Ouyang, Kunxi
Li, Juncheng
Huang, Hao
Que, Qingmin
Li, Pei
Chen, Xiaoyang
author_sort Ouyang, Kunxi
collection PubMed
description Plant tissues contain abundant polysaccharides, phenolic compounds and other metabolites, which makes it difficult to isolate high-quality RNA from them. In addition, Neolamarckia cadamba contains large quantities of other components, particularly RNA-binding alkaloids, which makes the isolation even more challenging. Here, we describe a concise and efficient RNA isolation method that combines the cetyltrimethyl ammonium bromide (CTAB) and Plant RNA Kit (Omega) protocols. Gel electrophoresis showed that RNA extracted from all tissues, using this protocol, was of good integrity and without DNA contamination. Furthermore, the isolated RNA was of high purity, with an A (260)/A (280) ratio of 2.1 and an A (260)/A (230) ratio of >2.0. The isolated RNA was also suitable for downstream applications, such as reverse transcription-polymerase chain reaction (RT-PCR) and quantitative RT-PCR (RT-qPCR). The RNA isolation method was also efficient for recalcitrant plant tissues.
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spelling pubmed-44340542015-05-25 A simple method for RNA isolation from various tissues of the tree Neolamarckia cadamba Ouyang, Kunxi Li, Juncheng Huang, Hao Que, Qingmin Li, Pei Chen, Xiaoyang Biotechnol Biotechnol Equip Article; Agriculture and Environmental Biotechnology Plant tissues contain abundant polysaccharides, phenolic compounds and other metabolites, which makes it difficult to isolate high-quality RNA from them. In addition, Neolamarckia cadamba contains large quantities of other components, particularly RNA-binding alkaloids, which makes the isolation even more challenging. Here, we describe a concise and efficient RNA isolation method that combines the cetyltrimethyl ammonium bromide (CTAB) and Plant RNA Kit (Omega) protocols. Gel electrophoresis showed that RNA extracted from all tissues, using this protocol, was of good integrity and without DNA contamination. Furthermore, the isolated RNA was of high purity, with an A (260)/A (280) ratio of 2.1 and an A (260)/A (230) ratio of >2.0. The isolated RNA was also suitable for downstream applications, such as reverse transcription-polymerase chain reaction (RT-PCR) and quantitative RT-PCR (RT-qPCR). The RNA isolation method was also efficient for recalcitrant plant tissues. Taylor & Francis 2014-11-02 2014-11-21 /pmc/articles/PMC4434054/ /pubmed/26019587 http://dx.doi.org/10.1080/13102818.2014.981086 Text en © 2014 The Author(s). Published by Taylor & Francis. http://creativecommons.org/licenses/by/3.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/3.0/, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The moral rights of the named author(s) have been asserted.
spellingShingle Article; Agriculture and Environmental Biotechnology
Ouyang, Kunxi
Li, Juncheng
Huang, Hao
Que, Qingmin
Li, Pei
Chen, Xiaoyang
A simple method for RNA isolation from various tissues of the tree Neolamarckia cadamba
title A simple method for RNA isolation from various tissues of the tree Neolamarckia cadamba
title_full A simple method for RNA isolation from various tissues of the tree Neolamarckia cadamba
title_fullStr A simple method for RNA isolation from various tissues of the tree Neolamarckia cadamba
title_full_unstemmed A simple method for RNA isolation from various tissues of the tree Neolamarckia cadamba
title_short A simple method for RNA isolation from various tissues of the tree Neolamarckia cadamba
title_sort simple method for rna isolation from various tissues of the tree neolamarckia cadamba
topic Article; Agriculture and Environmental Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4434054/
https://www.ncbi.nlm.nih.gov/pubmed/26019587
http://dx.doi.org/10.1080/13102818.2014.981086
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