Cargando…

Evaluating the performance of anchored hybrid enrichment at the tips of the tree of life: a phylogenetic analysis of Australian Eugongylus group scincid lizards

BACKGROUND: High-throughput sequencing using targeted enrichment and transcriptomic methods enables rapid construction of phylogenomic data sets incorporating hundreds to thousands of loci. These advances have enabled access to an unprecedented amount of nucleotide sequence data, but they also pose...

Descripción completa

Detalles Bibliográficos
Autores principales:	Brandley, Matthew C, Bragg, Jason G, Singhal, Sonal, Chapple, David G, Jennings, Charlotte K, Lemmon, Alan R, Lemmon, Emily Moriarty, Thompson, Michael B, Moritz, Craig
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4434831/ https://www.ncbi.nlm.nih.gov/pubmed/25880916 http://dx.doi.org/10.1186/s12862-015-0318-0

Ejemplares similares

Genetic variability and the ecology of geographic range: A test of the central‐marginal hypothesis in Australian scincid lizards
por: Singhal, Sonal, et al.
Publicado: (2022)

Snake and Bird Predation Drive the Repeated Convergent Evolution of Correlated Life History Traits and Phenotype in the Izu Island Scincid Lizard (Plestiodon latiscutatus)
por: Brandley, Matthew C., et al.
Publicado: (2014)

Rapid and repeated limb loss in a clade of scincid lizards
por: Skinner, Adam, et al.
Publicado: (2008)

Ontogeny and caudal autotomy fracture planes in a large scincid lizard, Egernia kingii
por: Barr, James I., et al.
Publicado: (2022)

Stable isotope ecology of a hyper-diverse community of scincid lizards from arid Australia
por: Grundler, Maggie R., et al.
Publicado: (2017)

Expanding anchored hybrid enrichment to resolve both deep and shallow relationships within the spider tree of life
por: Hamilton, Chris A., et al.
Publicado: (2016)

Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes
por: Ruane, Sara, et al.
Publicado: (2015)

Resolving Cypriniformes relationships using an anchored enrichment approach
por: Stout, Carla C., et al.
Publicado: (2016)

Evolutionary relationships among the snakelike pygopodid lizards: a review of phylogenetic studies of an enigmatic Australian adaptive radiation
por: Jennings, W. Bryan
Publicado: (2021)

Univariate and multivariate plasticity in response to incubation temperature in an Australian lizard
por: de Jong, Madeleine J., et al.
Publicado: (2022)

A genome-wide phylogeny of jumping spiders (Araneae, Salticidae), using anchored hybrid enrichment
por: Maddison, Wayne P., et al.
Publicado: (2017)

Are 100 enough? Inferring acanthomorph teleost phylogeny using Anchored Hybrid Enrichment
por: Eytan, Ron I., et al.
Publicado: (2015)

Lack of host phylogenetic structure in the gut bacterial communities of New Zealand cicadas and their interspecific hybrids
por: Haji, Diler, et al.
Publicado: (2022)

Candidate‐species delimitation in Desmognathus salamanders reveals gene flow across lineage boundaries, confounding phylogenetic estimation and clarifying hybrid zones
por: Pyron, Robert Alexander, et al.
Publicado: (2022)

The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
por: Lyra, Mariana L., et al.
Publicado: (2017)

Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus
por: Novikova, Polina Yu., et al.
Publicado: (2020)

On and off the rocks: persistence and ecological diversification in a tropical Australian lizard radiation
por: Oliver, Paul M., et al.
Publicado: (2019)

Localized Phylogenetic Discordance Among Nuclear Loci Due to Incomplete Lineage Sorting and Introgression in the Family of Cotton and Cacao (Malvaceae)
por: Hernández-Gutiérrez, Rebeca, et al.
Publicado: (2022)

Anchored enrichment dataset for true flies (order Diptera) reveals insights into the phylogeny of flower flies (family Syrphidae)
por: Young, Andrew Donovan, et al.
Publicado: (2016)

Bermuda as an Evolutionary Life Raft for an Ancient Lineage of Endangered Lizards
por: Brandley, Matthew C., et al.
Publicado: (2010)

Comparative skull anatomy of terrestrial and crevice-dwelling Trachylepis skinks (Squamata: Scincidae) with a survey of resources in scincid cranial osteology
por: Paluh, Daniel J., et al.
Publicado: (2017)

Geographic variation in hybridization across a reinforcement contact zone of chorus frogs (Pseudacris)
por: Lemmon, Emily Moriarty, et al.
Publicado: (2017)

Diversification in wild populations of the model organism Anolis carolinensis: A genome‐wide phylogeographic investigation
por: Manthey, Joseph D., et al.
Publicado: (2016)

Lizards, ticks and contributions to Australian parasitology: C. Michael Bull (1947–2016)
por: Godfrey, Stephanie S., et al.
Publicado: (2017)

Reptile Pregnancy Is Underpinned by Complex Changes in Uterine Gene Expression: A Comparative Analysis of the Uterine Transcriptome in Viviparous and Oviparous Lizards
por: Griffith, Oliver W., et al.
Publicado: (2016)

Gene Flow and Diversification in Himalopsyche martynovi Species Complex (Trichoptera: Rhyacophilidae) in the Hengduan Mountains
por: Deng, Xi-Ling, et al.
Publicado: (2021)

Anchoring quartet-based phylogenetic distances and applications to species tree reconstruction
por: Sayyari, Erfan, et al.
Publicado: (2016)

Biosecurity interceptions of an invasive lizard: origin of stowaways and human-assisted spread within New Zealand
por: Chapple, David G, et al.
Publicado: (2013)

Phylogenomic Evidence Overturns Current Conceptions of Social Evolution in Wasps (Vespidae)
por: Piekarski, Patrick K, et al.
Publicado: (2018)

Uterine Gene Expression in the Live-Bearing Lizard, Chalcides ocellatus, Reveals Convergence of Squamate Reptile and Mammalian Pregnancy Mechanisms
por: Brandley, Matthew C., et al.
Publicado: (2012)

The mitochondrial genomes of five frog species of the Neotropical genus Ischnocnema (Anura: Brachycephaloidea: Brachycephalidae)
por: Taucce, Pedro P. G., et al.
Publicado: (2018)

A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree
por: Särkinen, Tiina, et al.
Publicado: (2013)

A Phylogenetic Assessment of Nematodes (Oxyuroidea: Pharyngodonidae) Infecting Moroccan Lizards
por: Er-Rguibi, O., et al.
Publicado: (2022)

Short-Term Dispersal Response of an Endangered Australian Lizard Varies with Time of Year
por: Ebrahimi, Mehregan, et al.
Publicado: (2014)

Changes in ontogenetic patterns facilitate diversification in skull shape of Australian agamid lizards
por: Gray, Jaimi A., et al.
Publicado: (2019)

Sublethal pesticide exposure influences behaviour, but not condition in a widespread Australian lizard
por: Contador-Kelsall, Isabella, et al.
Publicado: (2022)

The Role of Anchor-Tipped Larval Hairs in the Organization of Ant Colonies
por: Penick, Clint A., et al.
Publicado: (2012)

Mitochondrial genomes of acrodont lizards: timing of gene rearrangements and phylogenetic and biogeographic implications
por: Okajima, Yasuhisa, et al.
Publicado: (2010)

Phylogenetic Analyses of Novel Squamate Adenovirus Sequences in Wild-Caught Anolis Lizards
por: Ascher, Jill M., et al.
Publicado: (2013)

Environmental temperatures shape thermal physiology as well as diversification and genome-wide substitution rates in lizards
por: Garcia-Porta, Joan, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_6c3c3ntm91j0ttdv1rv122ojtt