Cargando…

Describing Directional Cell Migration with a Characteristic Directionality Time

Many cell types can bias their direction of locomotion by coupling to external cues. Characteristics such as how fast a cell migrates and the directedness of its migration path can be quantified to provide metrics that determine which biochemical and biomechanical factors affect directional cell mig...

Descripción completa

Detalles Bibliográficos
Autores principales: Loosley, Alex J., O’Brien, Xian M., Reichner, Jonathan S., Tang, Jay X.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4439174/
https://www.ncbi.nlm.nih.gov/pubmed/25992908
http://dx.doi.org/10.1371/journal.pone.0127425
_version_ 1782372469553758208
author Loosley, Alex J.
O’Brien, Xian M.
Reichner, Jonathan S.
Tang, Jay X.
author_facet Loosley, Alex J.
O’Brien, Xian M.
Reichner, Jonathan S.
Tang, Jay X.
author_sort Loosley, Alex J.
collection PubMed
description Many cell types can bias their direction of locomotion by coupling to external cues. Characteristics such as how fast a cell migrates and the directedness of its migration path can be quantified to provide metrics that determine which biochemical and biomechanical factors affect directional cell migration, and by how much. To be useful, these metrics must be reproducible from one experimental setting to another. However, most are not reproducible because their numerical values depend on technical parameters like sampling interval and measurement error. To address the need for a reproducible metric, we analytically derive a metric called directionality time, the minimum observation time required to identify motion as directionally biased. We show that the corresponding fit function is applicable to a variety of ergodic, directionally biased motions. A motion is ergodic when the underlying dynamical properties such as speed or directional bias do not change over time. Measuring the directionality of nonergodic motion is less straightforward but we also show how this class of motion can be analyzed. Simulations are used to show the robustness of directionality time measurements and its decoupling from measurement errors. As a practical example, we demonstrate the measurement of directionality time, step-by-step, on noisy, nonergodic trajectories of chemotactic neutrophils. Because of its inherent generality, directionality time ought to be useful for characterizing a broad range of motions including intracellular transport, cell motility, and animal migration.
format Online
Article
Text
id pubmed-4439174
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-44391742015-05-29 Describing Directional Cell Migration with a Characteristic Directionality Time Loosley, Alex J. O’Brien, Xian M. Reichner, Jonathan S. Tang, Jay X. PLoS One Research Article Many cell types can bias their direction of locomotion by coupling to external cues. Characteristics such as how fast a cell migrates and the directedness of its migration path can be quantified to provide metrics that determine which biochemical and biomechanical factors affect directional cell migration, and by how much. To be useful, these metrics must be reproducible from one experimental setting to another. However, most are not reproducible because their numerical values depend on technical parameters like sampling interval and measurement error. To address the need for a reproducible metric, we analytically derive a metric called directionality time, the minimum observation time required to identify motion as directionally biased. We show that the corresponding fit function is applicable to a variety of ergodic, directionally biased motions. A motion is ergodic when the underlying dynamical properties such as speed or directional bias do not change over time. Measuring the directionality of nonergodic motion is less straightforward but we also show how this class of motion can be analyzed. Simulations are used to show the robustness of directionality time measurements and its decoupling from measurement errors. As a practical example, we demonstrate the measurement of directionality time, step-by-step, on noisy, nonergodic trajectories of chemotactic neutrophils. Because of its inherent generality, directionality time ought to be useful for characterizing a broad range of motions including intracellular transport, cell motility, and animal migration. Public Library of Science 2015-05-20 /pmc/articles/PMC4439174/ /pubmed/25992908 http://dx.doi.org/10.1371/journal.pone.0127425 Text en © 2015 Loosley et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Loosley, Alex J.
O’Brien, Xian M.
Reichner, Jonathan S.
Tang, Jay X.
Describing Directional Cell Migration with a Characteristic Directionality Time
title Describing Directional Cell Migration with a Characteristic Directionality Time
title_full Describing Directional Cell Migration with a Characteristic Directionality Time
title_fullStr Describing Directional Cell Migration with a Characteristic Directionality Time
title_full_unstemmed Describing Directional Cell Migration with a Characteristic Directionality Time
title_short Describing Directional Cell Migration with a Characteristic Directionality Time
title_sort describing directional cell migration with a characteristic directionality time
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4439174/
https://www.ncbi.nlm.nih.gov/pubmed/25992908
http://dx.doi.org/10.1371/journal.pone.0127425
work_keys_str_mv AT loosleyalexj describingdirectionalcellmigrationwithacharacteristicdirectionalitytime
AT obrienxianm describingdirectionalcellmigrationwithacharacteristicdirectionalitytime
AT reichnerjonathans describingdirectionalcellmigrationwithacharacteristicdirectionalitytime
AT tangjayx describingdirectionalcellmigrationwithacharacteristicdirectionalitytime