Cargando…
Describing Directional Cell Migration with a Characteristic Directionality Time
Many cell types can bias their direction of locomotion by coupling to external cues. Characteristics such as how fast a cell migrates and the directedness of its migration path can be quantified to provide metrics that determine which biochemical and biomechanical factors affect directional cell mig...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4439174/ https://www.ncbi.nlm.nih.gov/pubmed/25992908 http://dx.doi.org/10.1371/journal.pone.0127425 |
_version_ | 1782372469553758208 |
---|---|
author | Loosley, Alex J. O’Brien, Xian M. Reichner, Jonathan S. Tang, Jay X. |
author_facet | Loosley, Alex J. O’Brien, Xian M. Reichner, Jonathan S. Tang, Jay X. |
author_sort | Loosley, Alex J. |
collection | PubMed |
description | Many cell types can bias their direction of locomotion by coupling to external cues. Characteristics such as how fast a cell migrates and the directedness of its migration path can be quantified to provide metrics that determine which biochemical and biomechanical factors affect directional cell migration, and by how much. To be useful, these metrics must be reproducible from one experimental setting to another. However, most are not reproducible because their numerical values depend on technical parameters like sampling interval and measurement error. To address the need for a reproducible metric, we analytically derive a metric called directionality time, the minimum observation time required to identify motion as directionally biased. We show that the corresponding fit function is applicable to a variety of ergodic, directionally biased motions. A motion is ergodic when the underlying dynamical properties such as speed or directional bias do not change over time. Measuring the directionality of nonergodic motion is less straightforward but we also show how this class of motion can be analyzed. Simulations are used to show the robustness of directionality time measurements and its decoupling from measurement errors. As a practical example, we demonstrate the measurement of directionality time, step-by-step, on noisy, nonergodic trajectories of chemotactic neutrophils. Because of its inherent generality, directionality time ought to be useful for characterizing a broad range of motions including intracellular transport, cell motility, and animal migration. |
format | Online Article Text |
id | pubmed-4439174 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-44391742015-05-29 Describing Directional Cell Migration with a Characteristic Directionality Time Loosley, Alex J. O’Brien, Xian M. Reichner, Jonathan S. Tang, Jay X. PLoS One Research Article Many cell types can bias their direction of locomotion by coupling to external cues. Characteristics such as how fast a cell migrates and the directedness of its migration path can be quantified to provide metrics that determine which biochemical and biomechanical factors affect directional cell migration, and by how much. To be useful, these metrics must be reproducible from one experimental setting to another. However, most are not reproducible because their numerical values depend on technical parameters like sampling interval and measurement error. To address the need for a reproducible metric, we analytically derive a metric called directionality time, the minimum observation time required to identify motion as directionally biased. We show that the corresponding fit function is applicable to a variety of ergodic, directionally biased motions. A motion is ergodic when the underlying dynamical properties such as speed or directional bias do not change over time. Measuring the directionality of nonergodic motion is less straightforward but we also show how this class of motion can be analyzed. Simulations are used to show the robustness of directionality time measurements and its decoupling from measurement errors. As a practical example, we demonstrate the measurement of directionality time, step-by-step, on noisy, nonergodic trajectories of chemotactic neutrophils. Because of its inherent generality, directionality time ought to be useful for characterizing a broad range of motions including intracellular transport, cell motility, and animal migration. Public Library of Science 2015-05-20 /pmc/articles/PMC4439174/ /pubmed/25992908 http://dx.doi.org/10.1371/journal.pone.0127425 Text en © 2015 Loosley et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Loosley, Alex J. O’Brien, Xian M. Reichner, Jonathan S. Tang, Jay X. Describing Directional Cell Migration with a Characteristic Directionality Time |
title | Describing Directional Cell Migration with a Characteristic Directionality Time |
title_full | Describing Directional Cell Migration with a Characteristic Directionality Time |
title_fullStr | Describing Directional Cell Migration with a Characteristic Directionality Time |
title_full_unstemmed | Describing Directional Cell Migration with a Characteristic Directionality Time |
title_short | Describing Directional Cell Migration with a Characteristic Directionality Time |
title_sort | describing directional cell migration with a characteristic directionality time |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4439174/ https://www.ncbi.nlm.nih.gov/pubmed/25992908 http://dx.doi.org/10.1371/journal.pone.0127425 |
work_keys_str_mv | AT loosleyalexj describingdirectionalcellmigrationwithacharacteristicdirectionalitytime AT obrienxianm describingdirectionalcellmigrationwithacharacteristicdirectionalitytime AT reichnerjonathans describingdirectionalcellmigrationwithacharacteristicdirectionalitytime AT tangjayx describingdirectionalcellmigrationwithacharacteristicdirectionalitytime |