Cargando…

Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes

BACKGROUND: The number and complexity of repetitive elements varies between species, being in general most represented in those with larger genomes. Combining the flow-sorted chromosome arms approach to genome analysis with second generation DNA sequencing technologies provides a unique opportunity...

Descripción completa

Detalles Bibliográficos
Autores principales:	Garbus, Ingrid, Romero, José R, Valarik, Miroslav, Vanžurová, Hana, Karafiátová, Miroslava, Cáccamo, Mario, Doležel, Jaroslav, Tranquilli, Gabriela, Helguera, Marcelo, Echenique, Viviana
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4440537/ https://www.ncbi.nlm.nih.gov/pubmed/25962417 http://dx.doi.org/10.1186/s12864-015-1579-0

Ejemplares similares

New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing
por: Helguera, Marcelo, et al.
Publicado: (2015)

The utility of flow sorting to identify chromosomes carrying a single copy transgene in wheat
por: Cápal, Petr, et al.
Publicado: (2016)

Uncovering homeologous relationships between tetraploid Agropyron cristatum and bread wheat genomes using COS markers
por: Said, Mahmoud, et al.
Publicado: (2019)

A Bioinformatics Approach for Detecting Repetitive Nested Motifs using Pattern Matching
por: Romero, José R., et al.
Publicado: (2016)

Chromosome Painting Facilitates Anchoring Reference Genome Sequence to Chromosomes In Situ and Integrated Karyotyping in Banana (Musa Spp.)
por: Šimoníková, Denisa, et al.
Publicado: (2019)

The Agropyron cristatum karyotype, chromosome structure and cross-genome homoeology as revealed by fluorescence in situ hybridization with tandem repeats and wheat single-gene probes
por: Said, Mahmoud, et al.
Publicado: (2018)

A High Resolution Radiation Hybrid Map of Wheat Chromosome 4A
por: Balcárková, Barbora, et al.
Publicado: (2017)

Separating homeologs by phasing in the tetraploid wheat transcriptome
por: Krasileva, Ksenia V, et al.
Publicado: (2013)

Evolution of Homeologous Gene Expression in Polyploid Wheat
por: Zhao, Na, et al.
Publicado: (2020)

Fine Mapping of Lr49 Using 90K SNP Chip Array and Flow-Sorted Chromosome Sequencing in Wheat
por: Nsabiyera, Vallence, et al.
Publicado: (2020)

Heritable heading time variation in wheat lines with the same number of Ppd-B1 gene copies
por: Ivaničová, Zuzana, et al.
Publicado: (2017)

Correction: Heritable heading time variation in wheat lines with the same number of Ppd-B1 gene copies
por: Ivaničová, Zuzana, et al.
Publicado: (2018)

Illegitimate Recombination Between Homeologous Genes in Wheat Genome
por: Liu, Chao, et al.
Publicado: (2020)

Divergence between bread wheat and Triticum militinae in the powdery mildew resistance QPm.tut-4A locus and its implications for cloning of the resistance gene
por: Janáková, Eva, et al.
Publicado: (2018)

Long‐range assembly of sequences helps to unravel the genome structure and small variation of the wheat–Haynaldia villosa translocated chromosome 6VS.6AL
por: Xing, Liping, et al.
Publicado: (2021)

The in silico identification and characterization of a bread wheat/Triticum militinae introgression line
por: Abrouk, Michael, et al.
Publicado: (2016)

Development of Deletion Lines for Chromosome 3D of Bread Wheat
por: Svačina, Radim, et al.
Publicado: (2020)

Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat
por: Ranwez, Vincent, et al.
Publicado: (2013)

Genetic Diversity of Blumeria graminis f. sp. hordei in Central Europe and Its Comparison with Australian Population
por: Komínková, Eva, et al.
Publicado: (2016)

Integration of mate pair sequences to improve shotgun assemblies of flow-sorted chromosome arms of hexaploid wheat
por: Belova, Tatiana, et al.
Publicado: (2013)

Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat
por: Sehgal, Sunish K, et al.
Publicado: (2012)

The Dark Matter of Large Cereal Genomes: Long Tandem Repeats
por: Kapustová, Veronika, et al.
Publicado: (2019)

A multi gene sequence-based phylogeny of the Musaceae (banana) family
por: Christelová, Pavla, et al.
Publicado: (2011)

Identification of a Dominant Chlorosis Phenotype Through a Forward Screen of the Triticum turgidum cv. Kronos TILLING Population
por: Harrington, Sophie A., et al.
Publicado: (2019)

The improved assembly of 7DL chromosome provides insight into the structure and evolution of bread wheat
por: Feng, Kewei, et al.
Publicado: (2019)

Isolation and Sequencing of Chromosome Arm 7RS of Rye, Secale cereale
por: Petereit, Jakob, et al.
Publicado: (2022)

Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat
por: Rey, Elodie, et al.
Publicado: (2018)

Chromosome‐based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides
por: Akpinar, Bala Ani, et al.
Publicado: (2018)

Dynamic Evolution of α-Gliadin Prolamin Gene Family in Homeologous Genomes of Hexaploid Wheat
por: Huo, Naxin, et al.
Publicado: (2018)

A low-coverage 3′ RNA-seq to detect homeolog expression in polyploid wheat
por: Sun, Jianqiang, et al.
Publicado: (2023)

An unusual tandem kinase fusion protein confers leaf rust resistance in wheat
por: Wang, Yajun, et al.
Publicado: (2023)

B Chromosomes in Genus Sorghum (Poaceae)
por: Bednářová, Martina, et al.
Publicado: (2021)

Identification of COS markers specific for Thinopyrum elongatum chromosomes preliminary revealed high level of macrosyntenic relationship between the wheat and Th. elongatum genomes
por: Gaál, Eszter, et al.
Publicado: (2018)

A membrane-bound ankyrin repeat protein confers race-specific leaf rust disease resistance in wheat
por: Kolodziej, Markus C., et al.
Publicado: (2021)

Unbiased homeologous recombination during pneumococcal transformation allows for multiple chromosomal integration events
por: Kurushima, Jun, et al.
Publicado: (2020)

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications
por: Lucas, Stuart J, et al.
Publicado: (2014)

Expression partitioning of homeologs and tandem duplications contribute to salt tolerance in wheat (Triticum aestivum L.)
por: Zhang, Yumei, et al.
Publicado: (2016)

Proton‐pumping pyrophosphatase homeolog expression is a dynamic trait in bread wheat ( Triticum aestivum )
por: Menadue, Daniel Jamie, et al.
Publicado: (2021)

Homeolog expression quantification methods for allopolyploids
por: Kuo, Tony C Y, et al.
Publicado: (2018)

LYS3 encodes a prolamin-box-binding transcription factor that controls embryo growth in barley and wheat
por: Orman-Ligeza, Beata, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_ig45g6q4bh16oil5nrhqmm25ud