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Whitefly Genome Expression Reveals Host-Symbiont Interaction in Amino Acid Biosynthesis
BACKGROUND: Whitefly (Bemisia tabaci) complex is a serious insect pest of several crop plants worldwide. It comprises several morphologically indistinguishable species, however very little is known about their genetic divergence and biosynthetic pathways. In the present study, we performed transcrip...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441466/ https://www.ncbi.nlm.nih.gov/pubmed/26000976 http://dx.doi.org/10.1371/journal.pone.0126751 |
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author | Upadhyay, Santosh Kumar Sharma, Shailesh Singh, Harpal Dixit, Sameer Kumar, Jitesh Verma, Praveen C Chandrashekar, K. |
author_facet | Upadhyay, Santosh Kumar Sharma, Shailesh Singh, Harpal Dixit, Sameer Kumar, Jitesh Verma, Praveen C Chandrashekar, K. |
author_sort | Upadhyay, Santosh Kumar |
collection | PubMed |
description | BACKGROUND: Whitefly (Bemisia tabaci) complex is a serious insect pest of several crop plants worldwide. It comprises several morphologically indistinguishable species, however very little is known about their genetic divergence and biosynthetic pathways. In the present study, we performed transcriptome sequencing of Asia 1 species of B. tabaci complex and analyzed the interaction of host-symbiont genes in amino acid biosynthetic pathways. METHODOLOGY/PRINCIPAL FINDINGS: We obtained about 83 million reads using Illumina sequencing that assembled into 72716 unitigs. A total of 21129 unitigs were annotated at stringent parameters. Annotated unitigs were mapped to 52847 gene ontology (GO) terms and 131 Kyoto encyclopedia of genes and genomes (KEGG) pathways. Expression analysis of the genes involved in amino acid biosynthesis pathways revealed the complementation between whitefly and its symbiont partner Candidatus Portiera aleyrodidarum. Most of the non-essential amino acids and intermediates of essential amino acid pathways were supplied by the host insect to its symbiont. The symbiont expressed the pathways for the essential amino acids arginine, threonine and tryptophan and the immediate precursors of valine, leucine, isoleucine and phenyl-alanine. High level expression of the amino acid transporters in the whitefly suggested the molecular mechanisms for the exchange of amino acids between the host and the symbiont. CONCLUSIONS/SIGNIFICANCE: Our study provides a comprehensive transcriptome data for Asia 1 species of B. tabaci complex that focusses light on integration of host and symbiont genes in amino acid biosynthesis pathways. |
format | Online Article Text |
id | pubmed-4441466 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-44414662015-05-28 Whitefly Genome Expression Reveals Host-Symbiont Interaction in Amino Acid Biosynthesis Upadhyay, Santosh Kumar Sharma, Shailesh Singh, Harpal Dixit, Sameer Kumar, Jitesh Verma, Praveen C Chandrashekar, K. PLoS One Research Article BACKGROUND: Whitefly (Bemisia tabaci) complex is a serious insect pest of several crop plants worldwide. It comprises several morphologically indistinguishable species, however very little is known about their genetic divergence and biosynthetic pathways. In the present study, we performed transcriptome sequencing of Asia 1 species of B. tabaci complex and analyzed the interaction of host-symbiont genes in amino acid biosynthetic pathways. METHODOLOGY/PRINCIPAL FINDINGS: We obtained about 83 million reads using Illumina sequencing that assembled into 72716 unitigs. A total of 21129 unitigs were annotated at stringent parameters. Annotated unitigs were mapped to 52847 gene ontology (GO) terms and 131 Kyoto encyclopedia of genes and genomes (KEGG) pathways. Expression analysis of the genes involved in amino acid biosynthesis pathways revealed the complementation between whitefly and its symbiont partner Candidatus Portiera aleyrodidarum. Most of the non-essential amino acids and intermediates of essential amino acid pathways were supplied by the host insect to its symbiont. The symbiont expressed the pathways for the essential amino acids arginine, threonine and tryptophan and the immediate precursors of valine, leucine, isoleucine and phenyl-alanine. High level expression of the amino acid transporters in the whitefly suggested the molecular mechanisms for the exchange of amino acids between the host and the symbiont. CONCLUSIONS/SIGNIFICANCE: Our study provides a comprehensive transcriptome data for Asia 1 species of B. tabaci complex that focusses light on integration of host and symbiont genes in amino acid biosynthesis pathways. Public Library of Science 2015-05-22 /pmc/articles/PMC4441466/ /pubmed/26000976 http://dx.doi.org/10.1371/journal.pone.0126751 Text en © 2015 Upadhyay et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Upadhyay, Santosh Kumar Sharma, Shailesh Singh, Harpal Dixit, Sameer Kumar, Jitesh Verma, Praveen C Chandrashekar, K. Whitefly Genome Expression Reveals Host-Symbiont Interaction in Amino Acid Biosynthesis |
title | Whitefly Genome Expression Reveals Host-Symbiont Interaction in Amino Acid Biosynthesis |
title_full | Whitefly Genome Expression Reveals Host-Symbiont Interaction in Amino Acid Biosynthesis |
title_fullStr | Whitefly Genome Expression Reveals Host-Symbiont Interaction in Amino Acid Biosynthesis |
title_full_unstemmed | Whitefly Genome Expression Reveals Host-Symbiont Interaction in Amino Acid Biosynthesis |
title_short | Whitefly Genome Expression Reveals Host-Symbiont Interaction in Amino Acid Biosynthesis |
title_sort | whitefly genome expression reveals host-symbiont interaction in amino acid biosynthesis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4441466/ https://www.ncbi.nlm.nih.gov/pubmed/26000976 http://dx.doi.org/10.1371/journal.pone.0126751 |
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