Cargando…

Key challenges for the creation and maintenance of specialist protein resources

As the volume of data relating to proteins increases, researchers rely more and more on the analysis of published data, thus increasing the importance of good access to these data that vary from the supplemental material of individual articles, all the way to major reference databases with professio...

Descripción completa

Detalles Bibliográficos
Autores principales:	Holliday, Gemma L, Bairoch, Amos, Bagos, Pantelis G, Chatonnet, Arnaud, Craik, David J, Finn, Robert D, Henrissat, Bernard, Landsman, David, Manning, Gerard, Nagano, Nozomi, O’Donovan, Claire, Pruitt, Kim D, Rawlings, Neil D, Saier, Milton, Sowdhamini, Ramanathan, Spedding, Michael, Srinivasan, Narayanaswamy, Vriend, Gert, Babbitt, Patricia C, Bateman, Alex
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	John Wiley & Sons, Ltd 2015
Materias:	Perspectives
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4446195/ https://www.ncbi.nlm.nih.gov/pubmed/25820941 http://dx.doi.org/10.1002/prot.24803

Ejemplares similares

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat
por: Babbitt, Patricia C., et al.
Publicado: (2015)

Specialized structural and functional roles of residues selectively conserved in subfamilies of the pleckstrin homology domain family
por: Naveenkumar, Nagarajan, et al.
Publicado: (2019)

Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions
por: Jayashree, Srinivasan, et al.
Publicado: (2019)

Computational tools to study RNA-protein complexes
por: Bheemireddy, Sneha, et al.
Publicado: (2022)

More General Physicians or Specialists?
por: Bateman, D E
Publicado: (1995)

Fold combinations in multi-domain proteins
por: Naveenkumar, Nagarajan, et al.
Publicado: (2019)

DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins
por: Kalmankar, Neha V, et al.
Publicado: (2022)

Structures of distantly related interacting protein homologs are less divergent than non‐interacting homologs
por: Naveenkumar, Nagarajan, et al.
Publicado: (2022)

Improved Detection of Remote Homologues Using Cascade PSI-BLAST: Influence of Neighbouring Protein Families on Sequence Coverage
por: Kaushik, Swati, et al.
Publicado: (2013)

CREATION OF A VIRTUAL SPECIALIST OUTPATIENT CARDIOLOGY CLINIC FOR CORRECTIONAL FACILITIES IN AUSTRALIA
por: Gray, Rhys, et al.
Publicado: (2022)

CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations
por: Sandhya, Sankaran, et al.
Publicado: (2008)

NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection
por: Mudgal, Richa, et al.
Publicado: (2014)

Meta-analysis of haplotype-association studies: comparison of methods and empirical evaluation of the literature
por: Bagos, Pantelis G
Publicado: (2011)

Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
por: Bagos, Pantelis G, et al.
Publicado: (2006)

Evaluation of methods for predicting the topology of β-barrel outer membrane proteins and a consensus prediction method
por: Bagos, Pantelis G, et al.
Publicado: (2005)

OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria
por: Tsirigos, Konstantinos D., et al.
Publicado: (2011)

Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function
por: Sandhya, Sankaran, et al.
Publicado: (2009)

Predicting the Annual Funding for Public Hospitals with Regression Analysis on Hospital’s Operating Costs: Evidence from the Greek Public Sector
por: Zaza, Paraskevi N., et al.
Publicado: (2022)

Pepsin homologues in bacteria
por: Rawlings, Neil D, et al.
Publicado: (2009)

Origins of peptidases
por: Rawlings, Neil D., et al.
Publicado: (2019)

How to use the MEROPS database and website to help understand peptidase specificity
por: Rawlings, Neil D., et al.
Publicado: (2020)

Revealing microhabitat requirements of an endangered specialist lizard with LiDAR
por: Bradley, Holly S., et al.
Publicado: (2022)

IWS: Integrated web server for protein sequence and structure analysis
por: Shameer, Khader, et al.
Publicado: (2007)

Structural Analysis of Prolyl Oligopeptidases Using Molecular Docking and Dynamics: Insights into Conformational Changes and Ligand Binding
por: Kaushik, Swati, et al.
Publicado: (2011)

Genome-wide survey of DNA-binding proteins in Arabidopsis thaliana: analysis of distribution and functions
por: Malhotra, Sony, et al.
Publicado: (2013)

Re-visiting protein-centric two-tier classification of existing DNA-protein complexes
por: Malhotra, Sony, et al.
Publicado: (2012)

Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome
por: Shameer, Khader, et al.
Publicado: (2012)

Distribution, classification, domain architectures and evolution of prolyl oligopeptidases in prokaryotic lineages
por: Kaushik, Swati, et al.
Publicado: (2014)

Computational Approaches for Decoding Select Odorant-Olfactory Receptor Interactions Using Mini-Virtual Screening
por: Harini, K., et al.
Publicado: (2015)

Sequence search and analysis of gene products containing RNA recognition motifs in the human genome
por: Malhotra, Sony, et al.
Publicado: (2014)

PPCheck: A Webserver for the Quantitative Analysis of Protein–Protein Interfaces and Prediction of Residue Hotspots
por: Sukhwal, Anshul, et al.
Publicado: (2015)

Three-dimensional Modelling of the Voltage-gated Sodium Ion Channel from Anopheles gambiae Reveals Spatial Clustering of Evolutionarily Conserved Acidic Residues at the Extracellular Sites
por: Vinekar, Rithvik S., et al.
Publicado: (2017)

Genome-Wide Search for Tyrosine Phosphatases in the Human Genome Through Computational Approaches Leads to the Discovery of Few New Domain Architectures
por: Bhattacharyya, Teerna, et al.
Publicado: (2019)

Bioinformatics comparisons of RNA-binding proteins of pathogenic and non-pathogenic Escherichia coli strains reveal novel virulence factors
por: Ghosh, Pritha, et al.
Publicado: (2017)

Molecular Dynamics Simulations and Structural Analysis to Decipher Functional Impact of a Twenty Residue Insert in the Ternary Complex of Mus musculus TdT Isoform
por: Mutt, Eshita, et al.
Publicado: (2016)

Integrative modelling of TIR domain-containing adaptor molecule inducing interferon-β (TRIF) provides insights into its autoinhibited state
por: Mahita, Jarjapu, et al.
Publicado: (2017)

A genome-wide search of Toll/Interleukin-1 receptor (TIR) domain-containing adapter molecule (TICAM) and their evolutionary divergence from other TIR domain containing proteins
por: Verma, Shailya, et al.
Publicado: (2022)

School Health Services and Health Education Curricula in Greece: Scoping Review and Policy Plan
por: Soultatou, Pelagia, et al.
Publicado: (2023)

Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera
por: Karpe, Snehal D., et al.
Publicado: (2016)

A Hidden Markov Model method, capable of predicting and discriminating β-barrel outer membrane proteins
por: Bagos, Pantelis G, et al.
Publicado: (2004)

Cannot write session to /tmp/vufind_sessions/sess_hp2875b21g83e9g0hdski4ljii