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Homology-based method for detecting regions of interest in colonic digital images
BACKGROUND: A region of interest (ROI) is a part of tissue that contains important information for diagnosis. To use many image analysis methods efficiently, a technique that would allow for ROI identification is required. For the colon, ROIs are characterized by areas of stronger color intensity of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448533/ https://www.ncbi.nlm.nih.gov/pubmed/25907563 http://dx.doi.org/10.1186/s13000-015-0244-x |
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author | Nakane, Kazuaki Takiyama, Akihiro Mori, Seiji Matsuura, Nariaki |
author_facet | Nakane, Kazuaki Takiyama, Akihiro Mori, Seiji Matsuura, Nariaki |
author_sort | Nakane, Kazuaki |
collection | PubMed |
description | BACKGROUND: A region of interest (ROI) is a part of tissue that contains important information for diagnosis. To use many image analysis methods efficiently, a technique that would allow for ROI identification is required. For the colon, ROIs are characterized by areas of stronger color intensity of hematoxylin. Since malignant tumors grow in the innermost layer, most ROIs will be located in the colonic mucosa and will be an accumulation of tumor cells and/or integrated cells with distorted architecture. METHODS: Using homology theory, our group proposed a method to estimate the contact degree of elements in a unit area of tissue. Homology is a concept that is used in many branches of algebra and topology, and it can quantify the contact degree. Due to the lack of contact inhibition of cancer cells, an area with unusual contact degree is expected to be a potential ROI. RESULTS: The current work verifies the accuracy of this method against the results of pathological diagnosis, based on 1825 colonic images provided by the Osaka Medical Center for Cancer and Cardiovascular Diseases. Although we have many false positives and there is a possibility of missing undifferentiated types of cancer, this system is very effective for detecting ROIs. CONCLUSIONS: The mathematical system proposed by our group successfully detects ROIs and is a potentially useful tool for differentiating tumor areas in microscopic examination very quickly. Because we use only the information from low-power field images, there is room for further improvement. This system could be used to screen for not only colon cancer but other cancers as well. More sophisticated and more efficient automated pathological diagnosis systems can be developed by integrating various techniques available today. VIRTUAL SLIDE: The virtual slide(s) for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/7129390011429407. |
format | Online Article Text |
id | pubmed-4448533 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-44485332015-05-30 Homology-based method for detecting regions of interest in colonic digital images Nakane, Kazuaki Takiyama, Akihiro Mori, Seiji Matsuura, Nariaki Diagn Pathol Research BACKGROUND: A region of interest (ROI) is a part of tissue that contains important information for diagnosis. To use many image analysis methods efficiently, a technique that would allow for ROI identification is required. For the colon, ROIs are characterized by areas of stronger color intensity of hematoxylin. Since malignant tumors grow in the innermost layer, most ROIs will be located in the colonic mucosa and will be an accumulation of tumor cells and/or integrated cells with distorted architecture. METHODS: Using homology theory, our group proposed a method to estimate the contact degree of elements in a unit area of tissue. Homology is a concept that is used in many branches of algebra and topology, and it can quantify the contact degree. Due to the lack of contact inhibition of cancer cells, an area with unusual contact degree is expected to be a potential ROI. RESULTS: The current work verifies the accuracy of this method against the results of pathological diagnosis, based on 1825 colonic images provided by the Osaka Medical Center for Cancer and Cardiovascular Diseases. Although we have many false positives and there is a possibility of missing undifferentiated types of cancer, this system is very effective for detecting ROIs. CONCLUSIONS: The mathematical system proposed by our group successfully detects ROIs and is a potentially useful tool for differentiating tumor areas in microscopic examination very quickly. Because we use only the information from low-power field images, there is room for further improvement. This system could be used to screen for not only colon cancer but other cancers as well. More sophisticated and more efficient automated pathological diagnosis systems can be developed by integrating various techniques available today. VIRTUAL SLIDE: The virtual slide(s) for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/7129390011429407. BioMed Central 2015-04-24 /pmc/articles/PMC4448533/ /pubmed/25907563 http://dx.doi.org/10.1186/s13000-015-0244-x Text en © Nakane et al.; licensee BioMed Central. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Nakane, Kazuaki Takiyama, Akihiro Mori, Seiji Matsuura, Nariaki Homology-based method for detecting regions of interest in colonic digital images |
title | Homology-based method for detecting regions of interest in colonic digital images |
title_full | Homology-based method for detecting regions of interest in colonic digital images |
title_fullStr | Homology-based method for detecting regions of interest in colonic digital images |
title_full_unstemmed | Homology-based method for detecting regions of interest in colonic digital images |
title_short | Homology-based method for detecting regions of interest in colonic digital images |
title_sort | homology-based method for detecting regions of interest in colonic digital images |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448533/ https://www.ncbi.nlm.nih.gov/pubmed/25907563 http://dx.doi.org/10.1186/s13000-015-0244-x |
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