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Homology-based method for detecting regions of interest in colonic digital images

BACKGROUND: A region of interest (ROI) is a part of tissue that contains important information for diagnosis. To use many image analysis methods efficiently, a technique that would allow for ROI identification is required. For the colon, ROIs are characterized by areas of stronger color intensity of...

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Autores principales: Nakane, Kazuaki, Takiyama, Akihiro, Mori, Seiji, Matsuura, Nariaki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448533/
https://www.ncbi.nlm.nih.gov/pubmed/25907563
http://dx.doi.org/10.1186/s13000-015-0244-x
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author Nakane, Kazuaki
Takiyama, Akihiro
Mori, Seiji
Matsuura, Nariaki
author_facet Nakane, Kazuaki
Takiyama, Akihiro
Mori, Seiji
Matsuura, Nariaki
author_sort Nakane, Kazuaki
collection PubMed
description BACKGROUND: A region of interest (ROI) is a part of tissue that contains important information for diagnosis. To use many image analysis methods efficiently, a technique that would allow for ROI identification is required. For the colon, ROIs are characterized by areas of stronger color intensity of hematoxylin. Since malignant tumors grow in the innermost layer, most ROIs will be located in the colonic mucosa and will be an accumulation of tumor cells and/or integrated cells with distorted architecture. METHODS: Using homology theory, our group proposed a method to estimate the contact degree of elements in a unit area of tissue. Homology is a concept that is used in many branches of algebra and topology, and it can quantify the contact degree. Due to the lack of contact inhibition of cancer cells, an area with unusual contact degree is expected to be a potential ROI. RESULTS: The current work verifies the accuracy of this method against the results of pathological diagnosis, based on 1825 colonic images provided by the Osaka Medical Center for Cancer and Cardiovascular Diseases. Although we have many false positives and there is a possibility of missing undifferentiated types of cancer, this system is very effective for detecting ROIs. CONCLUSIONS: The mathematical system proposed by our group successfully detects ROIs and is a potentially useful tool for differentiating tumor areas in microscopic examination very quickly. Because we use only the information from low-power field images, there is room for further improvement. This system could be used to screen for not only colon cancer but other cancers as well. More sophisticated and more efficient automated pathological diagnosis systems can be developed by integrating various techniques available today. VIRTUAL SLIDE: The virtual slide(s) for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/7129390011429407.
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spelling pubmed-44485332015-05-30 Homology-based method for detecting regions of interest in colonic digital images Nakane, Kazuaki Takiyama, Akihiro Mori, Seiji Matsuura, Nariaki Diagn Pathol Research BACKGROUND: A region of interest (ROI) is a part of tissue that contains important information for diagnosis. To use many image analysis methods efficiently, a technique that would allow for ROI identification is required. For the colon, ROIs are characterized by areas of stronger color intensity of hematoxylin. Since malignant tumors grow in the innermost layer, most ROIs will be located in the colonic mucosa and will be an accumulation of tumor cells and/or integrated cells with distorted architecture. METHODS: Using homology theory, our group proposed a method to estimate the contact degree of elements in a unit area of tissue. Homology is a concept that is used in many branches of algebra and topology, and it can quantify the contact degree. Due to the lack of contact inhibition of cancer cells, an area with unusual contact degree is expected to be a potential ROI. RESULTS: The current work verifies the accuracy of this method against the results of pathological diagnosis, based on 1825 colonic images provided by the Osaka Medical Center for Cancer and Cardiovascular Diseases. Although we have many false positives and there is a possibility of missing undifferentiated types of cancer, this system is very effective for detecting ROIs. CONCLUSIONS: The mathematical system proposed by our group successfully detects ROIs and is a potentially useful tool for differentiating tumor areas in microscopic examination very quickly. Because we use only the information from low-power field images, there is room for further improvement. This system could be used to screen for not only colon cancer but other cancers as well. More sophisticated and more efficient automated pathological diagnosis systems can be developed by integrating various techniques available today. VIRTUAL SLIDE: The virtual slide(s) for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/7129390011429407. BioMed Central 2015-04-24 /pmc/articles/PMC4448533/ /pubmed/25907563 http://dx.doi.org/10.1186/s13000-015-0244-x Text en © Nakane et al.; licensee BioMed Central. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Nakane, Kazuaki
Takiyama, Akihiro
Mori, Seiji
Matsuura, Nariaki
Homology-based method for detecting regions of interest in colonic digital images
title Homology-based method for detecting regions of interest in colonic digital images
title_full Homology-based method for detecting regions of interest in colonic digital images
title_fullStr Homology-based method for detecting regions of interest in colonic digital images
title_full_unstemmed Homology-based method for detecting regions of interest in colonic digital images
title_short Homology-based method for detecting regions of interest in colonic digital images
title_sort homology-based method for detecting regions of interest in colonic digital images
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448533/
https://www.ncbi.nlm.nih.gov/pubmed/25907563
http://dx.doi.org/10.1186/s13000-015-0244-x
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