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Attenuation of species abundance distributions by sampling

Quantifying biodiversity aspects such as species presence/ absence, richness and abundance is an important challenge to answer scientific and resource management questions. In practice, biodiversity can only be assessed from biological material taken by surveys, a difficult task given limited time a...

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Detalles Bibliográficos
Autores principales: Shimadzu, Hideyasu, Darnell, Ross
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society Publishing 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448865/
https://www.ncbi.nlm.nih.gov/pubmed/26064626
http://dx.doi.org/10.1098/rsos.140219
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author Shimadzu, Hideyasu
Darnell, Ross
author_facet Shimadzu, Hideyasu
Darnell, Ross
author_sort Shimadzu, Hideyasu
collection PubMed
description Quantifying biodiversity aspects such as species presence/ absence, richness and abundance is an important challenge to answer scientific and resource management questions. In practice, biodiversity can only be assessed from biological material taken by surveys, a difficult task given limited time and resources. A type of random sampling, or often called sub-sampling, is a commonly used technique to reduce the amount of time and effort for investigating large quantities of biological samples. However, it is not immediately clear how (sub-)sampling affects the estimate of biodiversity aspects from a quantitative perspective. This paper specifies the effect of (sub-)sampling as attenuation of the species abundance distribution (SAD), and articulates how the sampling bias is induced to the SAD by random sampling. The framework presented also reveals some confusion in previous theoretical studies.
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spelling pubmed-44488652015-06-10 Attenuation of species abundance distributions by sampling Shimadzu, Hideyasu Darnell, Ross R Soc Open Sci Biology (Whole Organism) Quantifying biodiversity aspects such as species presence/ absence, richness and abundance is an important challenge to answer scientific and resource management questions. In practice, biodiversity can only be assessed from biological material taken by surveys, a difficult task given limited time and resources. A type of random sampling, or often called sub-sampling, is a commonly used technique to reduce the amount of time and effort for investigating large quantities of biological samples. However, it is not immediately clear how (sub-)sampling affects the estimate of biodiversity aspects from a quantitative perspective. This paper specifies the effect of (sub-)sampling as attenuation of the species abundance distribution (SAD), and articulates how the sampling bias is induced to the SAD by random sampling. The framework presented also reveals some confusion in previous theoretical studies. The Royal Society Publishing 2015-04-22 /pmc/articles/PMC4448865/ /pubmed/26064626 http://dx.doi.org/10.1098/rsos.140219 Text en © 2015 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Biology (Whole Organism)
Shimadzu, Hideyasu
Darnell, Ross
Attenuation of species abundance distributions by sampling
title Attenuation of species abundance distributions by sampling
title_full Attenuation of species abundance distributions by sampling
title_fullStr Attenuation of species abundance distributions by sampling
title_full_unstemmed Attenuation of species abundance distributions by sampling
title_short Attenuation of species abundance distributions by sampling
title_sort attenuation of species abundance distributions by sampling
topic Biology (Whole Organism)
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448865/
https://www.ncbi.nlm.nih.gov/pubmed/26064626
http://dx.doi.org/10.1098/rsos.140219
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