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Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software
BACKGROUND: The size and complexity of molecules being studied by single crystal diffraction is growing year by year, resulting in an increase in the difficulties encountered during structure determination. From the crystallisation itself and sample handling, to structure solution and refinement, sp...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448882/ https://www.ncbi.nlm.nih.gov/pubmed/26029252 http://dx.doi.org/10.1186/s13065-015-0105-4 |
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author | Parois, Pascal Cooper, Richard I Thompson, Amber L |
author_facet | Parois, Pascal Cooper, Richard I Thompson, Amber L |
author_sort | Parois, Pascal |
collection | PubMed |
description | BACKGROUND: The size and complexity of molecules being studied by single crystal diffraction is growing year by year, resulting in an increase in the difficulties encountered during structure determination. From the crystallisation itself and sample handling, to structure solution and refinement, specific problems due to larger molecules are discussed. RESULTS: During refinement, several methods are available to deal with the problems encountered with large structures within the software Crystals. Hydrogens atoms can neither be found easily nor refined freely, but restraints can be applied automatically. Special scattering factors can be used to model complex disorder. Finally chemical information can be included in the form of restraints in order to help the determination of a good model. Multicollinearity problems are more likely in the refinement of large structures; to some extent more precise and accurate algorithms can help. Also, if the global minimum is less well defined, faster refinement enables more cycles to be carried out, a necessity for good convergence. The efficiency of the algorithms in Crystals have been increased to help address these issues. CONCLUSIONS: Thus, crystal structures are getting larger and their complexity is increasing. Recent developments in precision and speed during the least squares in Crystals is helping the structural scientist to deal with larger structures more efficiently. |
format | Online Article Text |
id | pubmed-4448882 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-44488822015-05-30 Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software Parois, Pascal Cooper, Richard I Thompson, Amber L Chem Cent J Research Article BACKGROUND: The size and complexity of molecules being studied by single crystal diffraction is growing year by year, resulting in an increase in the difficulties encountered during structure determination. From the crystallisation itself and sample handling, to structure solution and refinement, specific problems due to larger molecules are discussed. RESULTS: During refinement, several methods are available to deal with the problems encountered with large structures within the software Crystals. Hydrogens atoms can neither be found easily nor refined freely, but restraints can be applied automatically. Special scattering factors can be used to model complex disorder. Finally chemical information can be included in the form of restraints in order to help the determination of a good model. Multicollinearity problems are more likely in the refinement of large structures; to some extent more precise and accurate algorithms can help. Also, if the global minimum is less well defined, faster refinement enables more cycles to be carried out, a necessity for good convergence. The efficiency of the algorithms in Crystals have been increased to help address these issues. CONCLUSIONS: Thus, crystal structures are getting larger and their complexity is increasing. Recent developments in precision and speed during the least squares in Crystals is helping the structural scientist to deal with larger structures more efficiently. Springer International Publishing 2015-05-24 /pmc/articles/PMC4448882/ /pubmed/26029252 http://dx.doi.org/10.1186/s13065-015-0105-4 Text en © Parois et al.; licensee Springer. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Parois, Pascal Cooper, Richard I Thompson, Amber L Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software |
title | Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software |
title_full | Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software |
title_fullStr | Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software |
title_full_unstemmed | Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software |
title_short | Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software |
title_sort | crystal structures of increasingly large molecules: meeting the challenges with crystals software |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448882/ https://www.ncbi.nlm.nih.gov/pubmed/26029252 http://dx.doi.org/10.1186/s13065-015-0105-4 |
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