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Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software

BACKGROUND: The size and complexity of molecules being studied by single crystal diffraction is growing year by year, resulting in an increase in the difficulties encountered during structure determination. From the crystallisation itself and sample handling, to structure solution and refinement, sp...

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Autores principales: Parois, Pascal, Cooper, Richard I, Thompson, Amber L
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448882/
https://www.ncbi.nlm.nih.gov/pubmed/26029252
http://dx.doi.org/10.1186/s13065-015-0105-4
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author Parois, Pascal
Cooper, Richard I
Thompson, Amber L
author_facet Parois, Pascal
Cooper, Richard I
Thompson, Amber L
author_sort Parois, Pascal
collection PubMed
description BACKGROUND: The size and complexity of molecules being studied by single crystal diffraction is growing year by year, resulting in an increase in the difficulties encountered during structure determination. From the crystallisation itself and sample handling, to structure solution and refinement, specific problems due to larger molecules are discussed. RESULTS: During refinement, several methods are available to deal with the problems encountered with large structures within the software Crystals. Hydrogens atoms can neither be found easily nor refined freely, but restraints can be applied automatically. Special scattering factors can be used to model complex disorder. Finally chemical information can be included in the form of restraints in order to help the determination of a good model. Multicollinearity problems are more likely in the refinement of large structures; to some extent more precise and accurate algorithms can help. Also, if the global minimum is less well defined, faster refinement enables more cycles to be carried out, a necessity for good convergence. The efficiency of the algorithms in Crystals have been increased to help address these issues. CONCLUSIONS: Thus, crystal structures are getting larger and their complexity is increasing. Recent developments in precision and speed during the least squares in Crystals is helping the structural scientist to deal with larger structures more efficiently.
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spelling pubmed-44488822015-05-30 Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software Parois, Pascal Cooper, Richard I Thompson, Amber L Chem Cent J Research Article BACKGROUND: The size and complexity of molecules being studied by single crystal diffraction is growing year by year, resulting in an increase in the difficulties encountered during structure determination. From the crystallisation itself and sample handling, to structure solution and refinement, specific problems due to larger molecules are discussed. RESULTS: During refinement, several methods are available to deal with the problems encountered with large structures within the software Crystals. Hydrogens atoms can neither be found easily nor refined freely, but restraints can be applied automatically. Special scattering factors can be used to model complex disorder. Finally chemical information can be included in the form of restraints in order to help the determination of a good model. Multicollinearity problems are more likely in the refinement of large structures; to some extent more precise and accurate algorithms can help. Also, if the global minimum is less well defined, faster refinement enables more cycles to be carried out, a necessity for good convergence. The efficiency of the algorithms in Crystals have been increased to help address these issues. CONCLUSIONS: Thus, crystal structures are getting larger and their complexity is increasing. Recent developments in precision and speed during the least squares in Crystals is helping the structural scientist to deal with larger structures more efficiently. Springer International Publishing 2015-05-24 /pmc/articles/PMC4448882/ /pubmed/26029252 http://dx.doi.org/10.1186/s13065-015-0105-4 Text en © Parois et al.; licensee Springer. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Parois, Pascal
Cooper, Richard I
Thompson, Amber L
Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software
title Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software
title_full Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software
title_fullStr Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software
title_full_unstemmed Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software
title_short Crystal structures of increasingly large molecules: meeting the challenges with CRYSTALS software
title_sort crystal structures of increasingly large molecules: meeting the challenges with crystals software
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4448882/
https://www.ncbi.nlm.nih.gov/pubmed/26029252
http://dx.doi.org/10.1186/s13065-015-0105-4
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