Cargando…
Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution
The increasing availability of genomic information from the Arthropoda continues to revolutionize our understanding of the biology of this most diverse animal phylum. However, our sampling of arthropod diversity remains uneven, and key clade such as the Myriapoda are severely underrepresented. Here...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453065/ https://www.ncbi.nlm.nih.gov/pubmed/25900922 http://dx.doi.org/10.1093/gbe/evv070 |
_version_ | 1782374409397338112 |
---|---|
author | Kenny, Nathan J. Shen, Xin Chan, Thomas T.H. Wong, Nicola W.Y. Chan, Ting Fung Chu, Ka Hou Lam, Hon-Ming Hui, Jerome H.L. |
author_facet | Kenny, Nathan J. Shen, Xin Chan, Thomas T.H. Wong, Nicola W.Y. Chan, Ting Fung Chu, Ka Hou Lam, Hon-Ming Hui, Jerome H.L. |
author_sort | Kenny, Nathan J. |
collection | PubMed |
description | The increasing availability of genomic information from the Arthropoda continues to revolutionize our understanding of the biology of this most diverse animal phylum. However, our sampling of arthropod diversity remains uneven, and key clade such as the Myriapoda are severely underrepresented. Here we present the genome of the cosmopolitanly distributed Rusty Millipede Trigoniulus corallinus, which represents the first diplopod genome to be published, and the second example from the Myriapoda as a whole. This genomic resource contains the majority of core eukaryotic genes (94.3%), and key transcription factor classes that were thought to be lost in the Ecdysozoa. Mitochondrial genome and gene family (transcription factor, Dscam, circadian clock-driving protein, odorant receptor cassette, bioactive compound, and cuticular protein) analyses were also carried out to shed light on their states in the Diplopoda and Myriapoda. The ready availability of T. corallinus recommends it as a new model for evolutionary developmental biology, and the data set described here will be of widespread utility in investigating myriapod and arthropod genomics and evolution. |
format | Online Article Text |
id | pubmed-4453065 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-44530652015-06-10 Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution Kenny, Nathan J. Shen, Xin Chan, Thomas T.H. Wong, Nicola W.Y. Chan, Ting Fung Chu, Ka Hou Lam, Hon-Ming Hui, Jerome H.L. Genome Biol Evol Research Article The increasing availability of genomic information from the Arthropoda continues to revolutionize our understanding of the biology of this most diverse animal phylum. However, our sampling of arthropod diversity remains uneven, and key clade such as the Myriapoda are severely underrepresented. Here we present the genome of the cosmopolitanly distributed Rusty Millipede Trigoniulus corallinus, which represents the first diplopod genome to be published, and the second example from the Myriapoda as a whole. This genomic resource contains the majority of core eukaryotic genes (94.3%), and key transcription factor classes that were thought to be lost in the Ecdysozoa. Mitochondrial genome and gene family (transcription factor, Dscam, circadian clock-driving protein, odorant receptor cassette, bioactive compound, and cuticular protein) analyses were also carried out to shed light on their states in the Diplopoda and Myriapoda. The ready availability of T. corallinus recommends it as a new model for evolutionary developmental biology, and the data set described here will be of widespread utility in investigating myriapod and arthropod genomics and evolution. Oxford University Press 2015-04-21 /pmc/articles/PMC4453065/ /pubmed/25900922 http://dx.doi.org/10.1093/gbe/evv070 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research Article Kenny, Nathan J. Shen, Xin Chan, Thomas T.H. Wong, Nicola W.Y. Chan, Ting Fung Chu, Ka Hou Lam, Hon-Ming Hui, Jerome H.L. Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution |
title | Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution |
title_full | Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution |
title_fullStr | Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution |
title_full_unstemmed | Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution |
title_short | Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution |
title_sort | genome of the rusty millipede, trigoniulus corallinus, illuminates diplopod, myriapod, and arthropod evolution |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453065/ https://www.ncbi.nlm.nih.gov/pubmed/25900922 http://dx.doi.org/10.1093/gbe/evv070 |
work_keys_str_mv | AT kennynathanj genomeoftherustymillipedetrigoniuluscorallinusilluminatesdiplopodmyriapodandarthropodevolution AT shenxin genomeoftherustymillipedetrigoniuluscorallinusilluminatesdiplopodmyriapodandarthropodevolution AT chanthomasth genomeoftherustymillipedetrigoniuluscorallinusilluminatesdiplopodmyriapodandarthropodevolution AT wongnicolawy genomeoftherustymillipedetrigoniuluscorallinusilluminatesdiplopodmyriapodandarthropodevolution AT chantingfung genomeoftherustymillipedetrigoniuluscorallinusilluminatesdiplopodmyriapodandarthropodevolution AT chukahou genomeoftherustymillipedetrigoniuluscorallinusilluminatesdiplopodmyriapodandarthropodevolution AT lamhonming genomeoftherustymillipedetrigoniuluscorallinusilluminatesdiplopodmyriapodandarthropodevolution AT huijeromehl genomeoftherustymillipedetrigoniuluscorallinusilluminatesdiplopodmyriapodandarthropodevolution |