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Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution

The increasing availability of genomic information from the Arthropoda continues to revolutionize our understanding of the biology of this most diverse animal phylum. However, our sampling of arthropod diversity remains uneven, and key clade such as the Myriapoda are severely underrepresented. Here...

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Autores principales: Kenny, Nathan J., Shen, Xin, Chan, Thomas T.H., Wong, Nicola W.Y., Chan, Ting Fung, Chu, Ka Hou, Lam, Hon-Ming, Hui, Jerome H.L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453065/
https://www.ncbi.nlm.nih.gov/pubmed/25900922
http://dx.doi.org/10.1093/gbe/evv070
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author Kenny, Nathan J.
Shen, Xin
Chan, Thomas T.H.
Wong, Nicola W.Y.
Chan, Ting Fung
Chu, Ka Hou
Lam, Hon-Ming
Hui, Jerome H.L.
author_facet Kenny, Nathan J.
Shen, Xin
Chan, Thomas T.H.
Wong, Nicola W.Y.
Chan, Ting Fung
Chu, Ka Hou
Lam, Hon-Ming
Hui, Jerome H.L.
author_sort Kenny, Nathan J.
collection PubMed
description The increasing availability of genomic information from the Arthropoda continues to revolutionize our understanding of the biology of this most diverse animal phylum. However, our sampling of arthropod diversity remains uneven, and key clade such as the Myriapoda are severely underrepresented. Here we present the genome of the cosmopolitanly distributed Rusty Millipede Trigoniulus corallinus, which represents the first diplopod genome to be published, and the second example from the Myriapoda as a whole. This genomic resource contains the majority of core eukaryotic genes (94.3%), and key transcription factor classes that were thought to be lost in the Ecdysozoa. Mitochondrial genome and gene family (transcription factor, Dscam, circadian clock-driving protein, odorant receptor cassette, bioactive compound, and cuticular protein) analyses were also carried out to shed light on their states in the Diplopoda and Myriapoda. The ready availability of T. corallinus recommends it as a new model for evolutionary developmental biology, and the data set described here will be of widespread utility in investigating myriapod and arthropod genomics and evolution.
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spelling pubmed-44530652015-06-10 Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution Kenny, Nathan J. Shen, Xin Chan, Thomas T.H. Wong, Nicola W.Y. Chan, Ting Fung Chu, Ka Hou Lam, Hon-Ming Hui, Jerome H.L. Genome Biol Evol Research Article The increasing availability of genomic information from the Arthropoda continues to revolutionize our understanding of the biology of this most diverse animal phylum. However, our sampling of arthropod diversity remains uneven, and key clade such as the Myriapoda are severely underrepresented. Here we present the genome of the cosmopolitanly distributed Rusty Millipede Trigoniulus corallinus, which represents the first diplopod genome to be published, and the second example from the Myriapoda as a whole. This genomic resource contains the majority of core eukaryotic genes (94.3%), and key transcription factor classes that were thought to be lost in the Ecdysozoa. Mitochondrial genome and gene family (transcription factor, Dscam, circadian clock-driving protein, odorant receptor cassette, bioactive compound, and cuticular protein) analyses were also carried out to shed light on their states in the Diplopoda and Myriapoda. The ready availability of T. corallinus recommends it as a new model for evolutionary developmental biology, and the data set described here will be of widespread utility in investigating myriapod and arthropod genomics and evolution. Oxford University Press 2015-04-21 /pmc/articles/PMC4453065/ /pubmed/25900922 http://dx.doi.org/10.1093/gbe/evv070 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Research Article
Kenny, Nathan J.
Shen, Xin
Chan, Thomas T.H.
Wong, Nicola W.Y.
Chan, Ting Fung
Chu, Ka Hou
Lam, Hon-Ming
Hui, Jerome H.L.
Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution
title Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution
title_full Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution
title_fullStr Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution
title_full_unstemmed Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution
title_short Genome of the Rusty Millipede, Trigoniulus corallinus, Illuminates Diplopod, Myriapod, and Arthropod Evolution
title_sort genome of the rusty millipede, trigoniulus corallinus, illuminates diplopod, myriapod, and arthropod evolution
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453065/
https://www.ncbi.nlm.nih.gov/pubmed/25900922
http://dx.doi.org/10.1093/gbe/evv070
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