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McSAS: software for the retrieval of model parameter distributions from scattering patterns
A user-friendly open-source Monte Carlo regression package (McSAS) is presented, which structures the analysis of small-angle scattering (SAS) using uncorrelated shape-similar particles (or scattering contributions). The underdetermined problem is solvable, provided that sufficient external informat...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453982/ https://www.ncbi.nlm.nih.gov/pubmed/26089769 http://dx.doi.org/10.1107/S1600576715007347 |
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author | Bressler, I. Pauw, B. R. Thünemann, A. F. |
author_facet | Bressler, I. Pauw, B. R. Thünemann, A. F. |
author_sort | Bressler, I. |
collection | PubMed |
description | A user-friendly open-source Monte Carlo regression package (McSAS) is presented, which structures the analysis of small-angle scattering (SAS) using uncorrelated shape-similar particles (or scattering contributions). The underdetermined problem is solvable, provided that sufficient external information is available. Based on this, the user picks a scatterer contribution model (or ‘shape’) from a comprehensive library and defines variation intervals of its model parameters. A multitude of scattering contribution models are included, including prolate and oblate nanoparticles, core–shell objects, several polymer models, and a model for densely packed spheres. Most importantly, the form-free Monte Carlo nature of McSAS means it is not necessary to provide further restrictions on the mathematical form of the parameter distribution; without prior knowledge, McSAS is able to extract complex multimodal or odd-shaped parameter distributions from SAS data. When provided with data on an absolute scale with reasonable uncertainty estimates, the software outputs model parameter distributions in absolute volume fraction, and provides the modes of the distribution (e.g. mean, variance etc.). In addition to facilitating the evaluation of (series of) SAS curves, McSAS also helps in assessing the significance of the results through the addition of uncertainty estimates to the result. The McSAS software can be integrated as part of an automated reduction and analysis procedure in laboratory instruments or at synchrotron beamlines. |
format | Online Article Text |
id | pubmed-4453982 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-44539822015-06-18 McSAS: software for the retrieval of model parameter distributions from scattering patterns Bressler, I. Pauw, B. R. Thünemann, A. F. J Appl Crystallogr Computer Programs A user-friendly open-source Monte Carlo regression package (McSAS) is presented, which structures the analysis of small-angle scattering (SAS) using uncorrelated shape-similar particles (or scattering contributions). The underdetermined problem is solvable, provided that sufficient external information is available. Based on this, the user picks a scatterer contribution model (or ‘shape’) from a comprehensive library and defines variation intervals of its model parameters. A multitude of scattering contribution models are included, including prolate and oblate nanoparticles, core–shell objects, several polymer models, and a model for densely packed spheres. Most importantly, the form-free Monte Carlo nature of McSAS means it is not necessary to provide further restrictions on the mathematical form of the parameter distribution; without prior knowledge, McSAS is able to extract complex multimodal or odd-shaped parameter distributions from SAS data. When provided with data on an absolute scale with reasonable uncertainty estimates, the software outputs model parameter distributions in absolute volume fraction, and provides the modes of the distribution (e.g. mean, variance etc.). In addition to facilitating the evaluation of (series of) SAS curves, McSAS also helps in assessing the significance of the results through the addition of uncertainty estimates to the result. The McSAS software can be integrated as part of an automated reduction and analysis procedure in laboratory instruments or at synchrotron beamlines. International Union of Crystallography 2015-05-22 /pmc/articles/PMC4453982/ /pubmed/26089769 http://dx.doi.org/10.1107/S1600576715007347 Text en © I. Bressler et al. 2015 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Computer Programs Bressler, I. Pauw, B. R. Thünemann, A. F. McSAS: software for the retrieval of model parameter distributions from scattering patterns |
title |
McSAS: software for the retrieval of model parameter distributions from scattering patterns |
title_full |
McSAS: software for the retrieval of model parameter distributions from scattering patterns |
title_fullStr |
McSAS: software for the retrieval of model parameter distributions from scattering patterns |
title_full_unstemmed |
McSAS: software for the retrieval of model parameter distributions from scattering patterns |
title_short |
McSAS: software for the retrieval of model parameter distributions from scattering patterns |
title_sort | mcsas: software for the retrieval of model parameter distributions from scattering patterns |
topic | Computer Programs |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4453982/ https://www.ncbi.nlm.nih.gov/pubmed/26089769 http://dx.doi.org/10.1107/S1600576715007347 |
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