Repbase Update, a database of repetitive elements in eukaryotic genomes

Repbase Update (RU) is a database of representative repeat sequences in eukaryotic genomes. Since its first development as a database of human repetitive sequences in 1992, RU has been serving as a well-curated reference database fundamental for almost all eukaryotic genome sequence analyses. Here,...

Descripción completa

Detalles Bibliográficos
Autores principales: Bao, Weidong, Kojima, Kenji K., Kohany, Oleksiy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4455052/
https://www.ncbi.nlm.nih.gov/pubmed/26045719
http://dx.doi.org/10.1186/s13100-015-0041-9
_version_ 1782374694806093824
author Bao, Weidong
Kojima, Kenji K.
Kohany, Oleksiy
author_facet Bao, Weidong
Kojima, Kenji K.
Kohany, Oleksiy
author_sort Bao, Weidong
collection PubMed
description Repbase Update (RU) is a database of representative repeat sequences in eukaryotic genomes. Since its first development as a database of human repetitive sequences in 1992, RU has been serving as a well-curated reference database fundamental for almost all eukaryotic genome sequence analyses. Here, we introduce recent updates of RU, focusing on technical issues concerning the submission and updating of Repbase entries and will give short examples of using RU data. RU sincerely invites a broader submission of repeat sequences from the research community. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13100-015-0041-9) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-4455052
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-44550522015-06-05 Repbase Update, a database of repetitive elements in eukaryotic genomes Bao, Weidong Kojima, Kenji K. Kohany, Oleksiy Mob DNA Software Repbase Update (RU) is a database of representative repeat sequences in eukaryotic genomes. Since its first development as a database of human repetitive sequences in 1992, RU has been serving as a well-curated reference database fundamental for almost all eukaryotic genome sequence analyses. Here, we introduce recent updates of RU, focusing on technical issues concerning the submission and updating of Repbase entries and will give short examples of using RU data. RU sincerely invites a broader submission of repeat sequences from the research community. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s13100-015-0041-9) contains supplementary material, which is available to authorized users. BioMed Central 2015-06-02 /pmc/articles/PMC4455052/ /pubmed/26045719 http://dx.doi.org/10.1186/s13100-015-0041-9 Text en © Bao et al. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software
Bao, Weidong
Kojima, Kenji K.
Kohany, Oleksiy
Repbase Update, a database of repetitive elements in eukaryotic genomes
title Repbase Update, a database of repetitive elements in eukaryotic genomes
title_full Repbase Update, a database of repetitive elements in eukaryotic genomes
title_fullStr Repbase Update, a database of repetitive elements in eukaryotic genomes
title_full_unstemmed Repbase Update, a database of repetitive elements in eukaryotic genomes
title_short Repbase Update, a database of repetitive elements in eukaryotic genomes
title_sort repbase update, a database of repetitive elements in eukaryotic genomes
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4455052/
https://www.ncbi.nlm.nih.gov/pubmed/26045719
http://dx.doi.org/10.1186/s13100-015-0041-9
work_keys_str_mv AT baoweidong repbaseupdateadatabaseofrepetitiveelementsineukaryoticgenomes
AT kojimakenjik repbaseupdateadatabaseofrepetitiveelementsineukaryoticgenomes
AT kohanyoleksiy repbaseupdateadatabaseofrepetitiveelementsineukaryoticgenomes

Ejemplares similares