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Identifying ultrasound and clinical features of breast cancer molecular subtypes by ensemble decision
Breast cancer is molecularly heterogeneous and categorized into four molecular subtypes: Luminal-A, Luminal-B, HER2-amplified and Triple-negative. In this study, we aimed to apply an ensemble decision approach to identify the ultrasound and clinical features related to the molecular subtypes. We col...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4457139/ https://www.ncbi.nlm.nih.gov/pubmed/26046791 http://dx.doi.org/10.1038/srep11085 |
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author | Zhang, Lei Li, Jing Xiao, Yun Cui, Hao Du, Guoqing Wang, Ying Li, Ziyao Wu, Tong Li, Xia Tian, Jiawei |
author_facet | Zhang, Lei Li, Jing Xiao, Yun Cui, Hao Du, Guoqing Wang, Ying Li, Ziyao Wu, Tong Li, Xia Tian, Jiawei |
author_sort | Zhang, Lei |
collection | PubMed |
description | Breast cancer is molecularly heterogeneous and categorized into four molecular subtypes: Luminal-A, Luminal-B, HER2-amplified and Triple-negative. In this study, we aimed to apply an ensemble decision approach to identify the ultrasound and clinical features related to the molecular subtypes. We collected ultrasound and clinical features from 1,000 breast cancer patients and performed immunohistochemistry on these samples. We used the ensemble decision approach to select unique features and to construct decision models. The decision model for Luminal-A subtype was constructed based on the presence of an echogenic halo and post-acoustic shadowing or indifference. The decision model for Luminal-B subtype was constructed based on the absence of an echogenic halo and vascularity. The decision model for HER2-amplified subtype was constructed based on the presence of post-acoustic enhancement, calcification, vascularity and advanced age. The model for Triple-negative subtype followed two rules. One was based on irregular shape, lobulate margin contour, the absence of calcification and hypovascularity, whereas the other was based on oval shape, hypovascularity and micro-lobulate margin contour. The accuracies of the models were 83.8%, 77.4%, 87.9% and 92.7%, respectively. We identified specific features of each molecular subtype and expanded the scope of ultrasound for making diagnoses using these decision models. |
format | Online Article Text |
id | pubmed-4457139 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-44571392015-06-12 Identifying ultrasound and clinical features of breast cancer molecular subtypes by ensemble decision Zhang, Lei Li, Jing Xiao, Yun Cui, Hao Du, Guoqing Wang, Ying Li, Ziyao Wu, Tong Li, Xia Tian, Jiawei Sci Rep Article Breast cancer is molecularly heterogeneous and categorized into four molecular subtypes: Luminal-A, Luminal-B, HER2-amplified and Triple-negative. In this study, we aimed to apply an ensemble decision approach to identify the ultrasound and clinical features related to the molecular subtypes. We collected ultrasound and clinical features from 1,000 breast cancer patients and performed immunohistochemistry on these samples. We used the ensemble decision approach to select unique features and to construct decision models. The decision model for Luminal-A subtype was constructed based on the presence of an echogenic halo and post-acoustic shadowing or indifference. The decision model for Luminal-B subtype was constructed based on the absence of an echogenic halo and vascularity. The decision model for HER2-amplified subtype was constructed based on the presence of post-acoustic enhancement, calcification, vascularity and advanced age. The model for Triple-negative subtype followed two rules. One was based on irregular shape, lobulate margin contour, the absence of calcification and hypovascularity, whereas the other was based on oval shape, hypovascularity and micro-lobulate margin contour. The accuracies of the models were 83.8%, 77.4%, 87.9% and 92.7%, respectively. We identified specific features of each molecular subtype and expanded the scope of ultrasound for making diagnoses using these decision models. Nature Publishing Group 2015-06-05 /pmc/articles/PMC4457139/ /pubmed/26046791 http://dx.doi.org/10.1038/srep11085 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Zhang, Lei Li, Jing Xiao, Yun Cui, Hao Du, Guoqing Wang, Ying Li, Ziyao Wu, Tong Li, Xia Tian, Jiawei Identifying ultrasound and clinical features of breast cancer molecular subtypes by ensemble decision |
title | Identifying ultrasound and clinical features of breast cancer molecular subtypes by ensemble decision |
title_full | Identifying ultrasound and clinical features of breast cancer molecular subtypes by ensemble decision |
title_fullStr | Identifying ultrasound and clinical features of breast cancer molecular subtypes by ensemble decision |
title_full_unstemmed | Identifying ultrasound and clinical features of breast cancer molecular subtypes by ensemble decision |
title_short | Identifying ultrasound and clinical features of breast cancer molecular subtypes by ensemble decision |
title_sort | identifying ultrasound and clinical features of breast cancer molecular subtypes by ensemble decision |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4457139/ https://www.ncbi.nlm.nih.gov/pubmed/26046791 http://dx.doi.org/10.1038/srep11085 |
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