Cargando…

Integrative epigenomic and genomic filtering for methylation markers in hepatocellular carcinomas

BACKGROUND: Epigenome-wide studies in hepatocellular carcinoma (HCC) have identified numerous genes with aberrant DNA methylation. However, methods for triaging functional candidate genes as useful biomarkers for epidemiological study have not yet been developed. METHODS: We conducted targeted next-...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shen, Jing, LeFave, Clare, Sirosh, Iryna, Siegel, Abby B., Tycko, Benjamin, Santella, Regina M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460673/ https://www.ncbi.nlm.nih.gov/pubmed/26059414 http://dx.doi.org/10.1186/s12920-015-0105-1

Ejemplares similares

Genome-Wide Expression of MicroRNAs Is Regulated by DNA Methylation in Hepatocarcinogenesis
por: Shen, Jing, et al.
Publicado: (2015)

Epigenomic insights into common disease
por: Revill, Kate, et al.
Publicado: (2011)

A pan-cancer analysis of driver gene mutations, DNA methylation and gene expressions reveals that chromatin remodeling is a major mechanism inducing global changes in cancer epigenomes
por: Youn, Ahrim, et al.
Publicado: (2018)

Integrative Analysis of Epigenome and Transcriptome Data Reveals Aberrantly Methylated Promoters and Enhancers in Hepatocellular Carcinoma
por: Huang, Peng, et al.
Publicado: (2021)

Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival
por: Shen, Jing, et al.
Publicado: (2015)

Integrative epigenomic analysis of differential DNA methylation in urothelial carcinoma
por: Aine, Mattias, et al.
Publicado: (2015)

The Role of Aflatoxins in Hepatocellular Carcinoma
por: Wu, Hui Chen, et al.
Publicado: (2012)

Robotic Total Intracorporeal Completion Proctectomy With Restorative IPAA: The NICE Approach
por: Haas, Eric M., et al.
Publicado: (2020)

EpiMix: an integrative tool for epigenomic subtyping using DNA methylation
por: Zheng, Yuanning, et al.
Publicado: (2023)

EpiMix is an integrative tool for epigenomic subtyping using DNA methylation
por: Zheng, Yuanning, et al.
Publicado: (2023)

Environmental Exposures and Hepatocellular Carcinoma
por: Santella, Regina M., et al.
Publicado: (2013)

Integration of Transcriptome and Epigenome to Identify and Develop Prognostic Markers for Ovarian Cancer
por: Xu, Can, et al.
Publicado: (2022)

Splicing factor hnRNPH drives an oncogenic splicing switch in gliomas
por: LeFave, Clare V, et al.
Publicado: (2011)

Active Integrated Filters for RF-Photonic Channelizers
por: Nagdi, Amr El, et al.
Publicado: (2011)

Identification of diagnostic markers in colorectal cancer via integrative epigenomics and genomics data
por: KOK-SIN, TEOW, et al.
Publicado: (2015)

Robotic natural-orifice IntraCorporeal anastomosis with Extraction (NICE procedure) for complicated diverticulitis
por: Haas, Eric M., et al.
Publicado: (2021)

Integrated small copy number variations and epigenome maps of disorders of sex development
por: Amarillo, Ina E, et al.
Publicado: (2016)

Bookmarking the epigenome by retrovirus integration
por: Senigl, Filip, et al.
Publicado: (2011)

Integrating epigenomics into pharmacogenomic studies
por: Zhang, Wei, et al.
Publicado: (2008)

The role of DNA methylation in directing the functional organization of the cancer epigenome
por: Lay, Fides D., et al.
Publicado: (2015)

Robotic NICE Procedure Using Handsewn Technique
por: Haas, Eric M., et al.
Publicado: (2022)

Epigenome-wide DNA methylation profiling of portal vein tumor thrombosis (PVTT) tissues in hepatocellular carcinoma patients
por: Fan, Xiaoxiao, et al.
Publicado: (2020)

Integrating Epigenomics into the Understanding of Biomedical Insight
por: Han, Yixing, et al.
Publicado: (2016)

Cloud Machine Learning
por: Sirosh, Joseph
Publicado: (2015)

Epigenome-wide discovery and evaluation of leukocyte DNA methylation markers for the detection of colorectal cancer in a screening setting
por: Heiss, Jonathan Alexander, et al.
Publicado: (2017)

Epigenomic analysis of 5-hydroxymethylcytosine (5hmC) reveals novel DNA methylation markers for lung cancers
por: Wang, Zhihui, et al.
Publicado: (2020)

Epigenome-wide association study identifies DNA methylation markers for asthma remission in whole blood and nasal epithelium
por: Qi, Cancan, et al.
Publicado: (2020)

Regulatory genomic circuitry of human disease loci by integrative epigenomics
por: Boix, Carles A., et al.
Publicado: (2021)

The aging epigenome: DNA methylation from the cradle to the grave
por: Winnefeld, Marc, et al.
Publicado: (2012)

DNA methylation and epigenomics: new technologies and emerging concepts
por: Chatterjee, Aniruddha, et al.
Publicado: (2015)

Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice
por: Choi, Jae Young, et al.
Publicado: (2018)

Epigenome-wide DNA methylation in obsessive-compulsive disorder
por: Schiele, Miriam A., et al.
Publicado: (2022)

Resetting the epigenome: Methylation dynamics in cancer stem cells
por: Roy, Aiendrila, et al.
Publicado: (2022)

Age-related methylation changes in the human sperm epigenome
por: Bernhardt, Laura, et al.
Publicado: (2023)

Epigenome‐wide DNA methylation analysis of myasthenia gravis
por: Lin, Jingjing, et al.
Publicado: (2023)

Transcriptional provirus silencing as a crosstalk of de novo DNA methylation and epigenomic features at the integration site
por: Šenigl, Filip, et al.
Publicado: (2012)

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data
por: Kishore, Kamal, et al.
Publicado: (2015)

Regulation of DNA methylation on key parasitism genes of Cysticercus cellulosae revealed by integrative epigenomic-transcriptomic analyses
por: Wang, Xinrui, et al.
Publicado: (2021)

Comparative and integrative analysis of transcriptomic and epigenomic-wide DNA methylation changes in African American prostate cancer
por: Creighton, Chad J., et al.
Publicado: (2023)

Cross-Ancestry DNA Methylation Marks of Insulin Resistance in Pregnancy: An Integrative Epigenome-Wide Association Study
por: Fragoso-Bargas, Nicolas, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_e9acthocsao8up1ll23c2lh0iu