Cargando…

Fair evaluation of global network aligners

BACKGROUND: Analogous to genomic sequence alignment, biological network alignment identifies conserved regions between networks of different species. Then, function can be transferred from well- to poorly-annotated species between aligned network regions. Network alignment typically encompasses two...

Descripción completa

Detalles Bibliográficos
Autores principales:	Crawford, Joseph, Sun, Yihan, Milenković, Tijana
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460690/ https://www.ncbi.nlm.nih.gov/pubmed/26060505 http://dx.doi.org/10.1186/s13015-015-0050-8

Ejemplares similares

Local versus global biological network alignment
por: Meng, Lei, et al.
Publicado: (2016)

The post-genomic era of biological network alignment
por: Faisal, Fazle E, et al.
Publicado: (2015)

Data-driven network alignment
por: Gu, Shawn, et al.
Publicado: (2020)

Proper evaluation of alignment-free network comparison methods
por: Yaveroğlu, Ömer Nebil, et al.
Publicado: (2015)

Optimal Network Alignment with Graphlet Degree Vectors
por: Milenković, Tijana, et al.
Publicado: (2010)

ClueNet: Clustering a temporal network based on topological similarity rather than denseness
por: Crawford, Joseph, et al.
Publicado: (2018)

Data-driven biological network alignment that uses topological, sequence, and functional information
por: Gu, Shawn, et al.
Publicado: (2021)

L-HetNetAligner: A novel algorithm for Local Alignment of Heterogeneous Biological Networks
por: Milano, Marianna, et al.
Publicado: (2020)

From homogeneous to heterogeneous network alignment via colored graphlets
por: Gu, Shawn, et al.
Publicado: (2018)

Alignment of dynamic networks
por: Vijayan, V, et al.
Publicado: (2017)

SCOUT: simultaneous time segmentation and community detection in dynamic networks
por: Hulovatyy, Yuriy, et al.
Publicado: (2016)

Aligning restricted access data with FAIR: a systematic review
por: Martorana, Margherita, et al.
Publicado: (2022)

BioAlign: An Accurate Global PPI Network Alignment Algorithm
por: Ayub, Umair, et al.
Publicado: (2022)

Dominating Biological Networks
por: Milenković, Tijana, et al.
Publicado: (2011)

Improved supervised prediction of aging-related genes via weighted dynamic network analysis
por: Li, Qi, et al.
Publicado: (2021)

From FAIR to FAIRS: Data security by design for the global burden of animal diseases
por: Stacey, Deborah, et al.
Publicado: (2022)

Optimized Null Model for Protein Structure Networks
por: Milenković, Tijana, et al.
Publicado: (2009)

GraphCrunch: A tool for large network analyses
por: Milenković, Tijana, et al.
Publicado: (2008)

Aligning Semantic Interoperability Frameworks with the FOXS Stack for FAIR Health Data
por: Meredith, John, et al.
Publicado: (2023)

Alignment of the muon-flux spectrometer in FairShip using the survey measurements
por: Bick, Daniel, et al.
Publicado: (2019)

GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison
por: Faisal, Fazle E., et al.
Publicado: (2017)

Author Correction: GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison
por: Faisal, Fazle E., et al.
Publicado: (2020)

Global multiple protein-protein interaction network alignment by combining pairwise network alignments
por: Dohrmann, Jakob, et al.
Publicado: (2015)

Net2Align: An Algorithm For Pairwise Global Alignment of Biological Networks
por: Narad, Priyanka, et al.
Publicado: (2016)

Fair Topologies: Community Structures and Network Hubs Drive Emergence of Fairness Norms
por: Mosleh, Mohsen, et al.
Publicado: (2017)

Network analysis of the NetHealth data: exploring co-evolution of individuals’ social network positions and physical activities
por: Liu, Shikang, et al.
Publicado: (2018)

Scalable global alignment for multiple biological networks
por: Shih, Yu-Keng, et al.
Publicado: (2012)

A tool for assessing alignment of biomedical data repositories with open, FAIR, citation and trustworthy principles
por: Murphy, Fiona, et al.
Publicado: (2021)

Intelligent Evaluation of Global Spinal Alignment by a Decentralized Convolutional Neural Network
por: Nguyen, Thong Phi, et al.
Publicado: (2022)

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets
por: Ho, Hsiang, et al.
Publicado: (2010)

Network-based protein structural classification
por: Newaz, Khalique, et al.
Publicado: (2020)

HubAlign: an accurate and efficient method for global alignment of protein–protein interaction networks
por: Hashemifar, Somaye, et al.
Publicado: (2014)

Optimizing a global alignment of protein interaction networks
por: Chindelevitch, Leonid, et al.
Publicado: (2013)

Perceived fairness of claimants undergoing a work disability evaluation: Development and validation of the Basel Fairness Questionnaire
por: Lohss, Regine, et al.
Publicado: (2020)

“A More Equitable Society”: The Politics of Global Fairness in Paralympic Sport
por: Swartz, Leslie, et al.
Publicado: (2016)

BEXIS2: A FAIR-aligned data management system for biodiversity, ecology and environmental data
por: Chamanara, Javad, et al.
Publicado: (2021)

Intention-to-Treat: Is That Fair?
por: Dettori, Joseph R., et al.
Publicado: (2020)

Structural power and the evolution of collective fairness in social networks
por: Santos, Fernando P., et al.
Publicado: (2017)

A new graph-based method for pairwise global network alignment
por: Klau, Gunnar W
Publicado: (2009)

A review of protein–protein interaction network alignment: From pathway comparison to global alignment
por: Ma, Cheng-Yu, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_hrmfhlv0ukje2khgr300r6pbmf