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A simple program to measure and analyse tree rings using Excel, R and SigmaScan
I present a new software that links a program for image analysis (SigmaScan), one for spreadsheets (Excel) and one for statistical analysis (R) for applications of tree-ring analysis. The first macro measures ring width marked by the user on scanned images, stores raw and detrended data in Excel and...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Archeonatura
2011
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4461182/ https://www.ncbi.nlm.nih.gov/pubmed/26109835 http://dx.doi.org/10.1016/j.dendro.2010.11.002 |
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author | Hietz, Peter |
author_facet | Hietz, Peter |
author_sort | Hietz, Peter |
collection | PubMed |
description | I present a new software that links a program for image analysis (SigmaScan), one for spreadsheets (Excel) and one for statistical analysis (R) for applications of tree-ring analysis. The first macro measures ring width marked by the user on scanned images, stores raw and detrended data in Excel and calculates the distance to the pith and inter-series correlations. A second macro measures darkness along a defined path to identify latewood–earlywood transition in conifers, and a third shows the potential for automatic detection of boundaries. Written in Visual Basic for Applications, the code makes use of the advantages of existing programs and is consequently very economic and relatively simple to adjust to the requirements of specific projects or to expand making use of already available code. |
format | Online Article Text |
id | pubmed-4461182 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Archeonatura |
record_format | MEDLINE/PubMed |
spelling | pubmed-44611822015-06-22 A simple program to measure and analyse tree rings using Excel, R and SigmaScan Hietz, Peter Dendrochronologia (Verona) Technical Note I present a new software that links a program for image analysis (SigmaScan), one for spreadsheets (Excel) and one for statistical analysis (R) for applications of tree-ring analysis. The first macro measures ring width marked by the user on scanned images, stores raw and detrended data in Excel and calculates the distance to the pith and inter-series correlations. A second macro measures darkness along a defined path to identify latewood–earlywood transition in conifers, and a third shows the potential for automatic detection of boundaries. Written in Visual Basic for Applications, the code makes use of the advantages of existing programs and is consequently very economic and relatively simple to adjust to the requirements of specific projects or to expand making use of already available code. Archeonatura 2011 /pmc/articles/PMC4461182/ /pubmed/26109835 http://dx.doi.org/10.1016/j.dendro.2010.11.002 Text en © 2011 Elsevier GmbH. https://creativecommons.org/licenses/by-nc-nd/3.0/ Open Access under CC BY-NC-ND 3.0 (https://creativecommons.org/licenses/by-nc-nd/3.0/) license |
spellingShingle | Technical Note Hietz, Peter A simple program to measure and analyse tree rings using Excel, R and SigmaScan |
title | A simple program to measure and analyse tree rings using Excel, R and SigmaScan |
title_full | A simple program to measure and analyse tree rings using Excel, R and SigmaScan |
title_fullStr | A simple program to measure and analyse tree rings using Excel, R and SigmaScan |
title_full_unstemmed | A simple program to measure and analyse tree rings using Excel, R and SigmaScan |
title_short | A simple program to measure and analyse tree rings using Excel, R and SigmaScan |
title_sort | simple program to measure and analyse tree rings using excel, r and sigmascan |
topic | Technical Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4461182/ https://www.ncbi.nlm.nih.gov/pubmed/26109835 http://dx.doi.org/10.1016/j.dendro.2010.11.002 |
work_keys_str_mv | AT hietzpeter asimpleprogramtomeasureandanalysetreeringsusingexcelrandsigmascan AT hietzpeter simpleprogramtomeasureandanalysetreeringsusingexcelrandsigmascan |