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The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model

We developed a two-level statistical model that addresses the question of how properties of neurite morphology shape the large-scale network connectivity. We adopted a low-dimensional statistical description of neurites. From the neurite model description we derived the expected number of synapses,...

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Autores principales: Aćimović, Jugoslava, Mäki-Marttunen, Tuomo, Linne, Marja-Leena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4461825/
https://www.ncbi.nlm.nih.gov/pubmed/26113811
http://dx.doi.org/10.3389/fnana.2015.00076
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author Aćimović, Jugoslava
Mäki-Marttunen, Tuomo
Linne, Marja-Leena
author_facet Aćimović, Jugoslava
Mäki-Marttunen, Tuomo
Linne, Marja-Leena
author_sort Aćimović, Jugoslava
collection PubMed
description We developed a two-level statistical model that addresses the question of how properties of neurite morphology shape the large-scale network connectivity. We adopted a low-dimensional statistical description of neurites. From the neurite model description we derived the expected number of synapses, node degree, and the effective radius, the maximal distance between two neurons expected to form at least one synapse. We related these quantities to the network connectivity described using standard measures from graph theory, such as motif counts, clustering coefficient, minimal path length, and small-world coefficient. These measures are used in a neuroscience context to study phenomena from synaptic connectivity in the small neuronal networks to large scale functional connectivity in the cortex. For these measures we provide analytical solutions that clearly relate different model properties. Neurites that sparsely cover space lead to a small effective radius. If the effective radius is small compared to the overall neuron size the obtained networks share similarities with the uniform random networks as each neuron connects to a small number of distant neurons. Large neurites with densely packed branches lead to a large effective radius. If this effective radius is large compared to the neuron size, the obtained networks have many local connections. In between these extremes, the networks maximize the variability of connection repertoires. The presented approach connects the properties of neuron morphology with large scale network properties without requiring heavy simulations with many model parameters. The two-steps procedure provides an easier interpretation of the role of each modeled parameter. The model is flexible and each of its components can be further expanded. We identified a range of model parameters that maximizes variability in network connectivity, the property that might affect network capacity to exhibit different dynamical regimes.
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spelling pubmed-44618252015-06-25 The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model Aćimović, Jugoslava Mäki-Marttunen, Tuomo Linne, Marja-Leena Front Neuroanat Neuroscience We developed a two-level statistical model that addresses the question of how properties of neurite morphology shape the large-scale network connectivity. We adopted a low-dimensional statistical description of neurites. From the neurite model description we derived the expected number of synapses, node degree, and the effective radius, the maximal distance between two neurons expected to form at least one synapse. We related these quantities to the network connectivity described using standard measures from graph theory, such as motif counts, clustering coefficient, minimal path length, and small-world coefficient. These measures are used in a neuroscience context to study phenomena from synaptic connectivity in the small neuronal networks to large scale functional connectivity in the cortex. For these measures we provide analytical solutions that clearly relate different model properties. Neurites that sparsely cover space lead to a small effective radius. If the effective radius is small compared to the overall neuron size the obtained networks share similarities with the uniform random networks as each neuron connects to a small number of distant neurons. Large neurites with densely packed branches lead to a large effective radius. If this effective radius is large compared to the neuron size, the obtained networks have many local connections. In between these extremes, the networks maximize the variability of connection repertoires. The presented approach connects the properties of neuron morphology with large scale network properties without requiring heavy simulations with many model parameters. The two-steps procedure provides an easier interpretation of the role of each modeled parameter. The model is flexible and each of its components can be further expanded. We identified a range of model parameters that maximizes variability in network connectivity, the property that might affect network capacity to exhibit different dynamical regimes. Frontiers Media S.A. 2015-06-10 /pmc/articles/PMC4461825/ /pubmed/26113811 http://dx.doi.org/10.3389/fnana.2015.00076 Text en Copyright © 2015 Aćimović, Mäki-Marttunen and Linne. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Aćimović, Jugoslava
Mäki-Marttunen, Tuomo
Linne, Marja-Leena
The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model
title The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model
title_full The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model
title_fullStr The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model
title_full_unstemmed The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model
title_short The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model
title_sort effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4461825/
https://www.ncbi.nlm.nih.gov/pubmed/26113811
http://dx.doi.org/10.3389/fnana.2015.00076
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