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A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography

Metagenomic studies have revealed the unexplored diversity of the environmental virosphere. However, most studies are biased towards specific types of viral genomes due to the absence of universal methods to access all viral genome types. In the present study, we established a novel system to effici...

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Autores principales: Urayama, Syun-ichi, Yoshida-Takashima, Yukari, Yoshida, Mitsuhiro, Tomaru, Yuji, Moriyama, Hiromitsu, Takai, Ken, Nunoura, Takuro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI) 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462933/
https://www.ncbi.nlm.nih.gov/pubmed/26004793
http://dx.doi.org/10.1264/jsme2.ME14174
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author Urayama, Syun-ichi
Yoshida-Takashima, Yukari
Yoshida, Mitsuhiro
Tomaru, Yuji
Moriyama, Hiromitsu
Takai, Ken
Nunoura, Takuro
author_facet Urayama, Syun-ichi
Yoshida-Takashima, Yukari
Yoshida, Mitsuhiro
Tomaru, Yuji
Moriyama, Hiromitsu
Takai, Ken
Nunoura, Takuro
author_sort Urayama, Syun-ichi
collection PubMed
description Metagenomic studies have revealed the unexplored diversity of the environmental virosphere. However, most studies are biased towards specific types of viral genomes due to the absence of universal methods to access all viral genome types. In the present study, we established a novel system to efficiently separate single- and double-stranded DNA/RNA viral genomes using hydroxyapatite and cellulose chromatography. This method will allow us to quantitatively and simultaneously access four types of viral genomes and will provide important clues to further understand previously unexplored environmental viral populations and obtain potentially unbiased libraries from environmental viral communities.
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spelling pubmed-44629332015-06-19 A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography Urayama, Syun-ichi Yoshida-Takashima, Yukari Yoshida, Mitsuhiro Tomaru, Yuji Moriyama, Hiromitsu Takai, Ken Nunoura, Takuro Microbes Environ Short Communication Metagenomic studies have revealed the unexplored diversity of the environmental virosphere. However, most studies are biased towards specific types of viral genomes due to the absence of universal methods to access all viral genome types. In the present study, we established a novel system to efficiently separate single- and double-stranded DNA/RNA viral genomes using hydroxyapatite and cellulose chromatography. This method will allow us to quantitatively and simultaneously access four types of viral genomes and will provide important clues to further understand previously unexplored environmental viral populations and obtain potentially unbiased libraries from environmental viral communities. the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI) 2015-06 2015-05-23 /pmc/articles/PMC4462933/ /pubmed/26004793 http://dx.doi.org/10.1264/jsme2.ME14174 Text en Copyright 2015 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Communication
Urayama, Syun-ichi
Yoshida-Takashima, Yukari
Yoshida, Mitsuhiro
Tomaru, Yuji
Moriyama, Hiromitsu
Takai, Ken
Nunoura, Takuro
A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography
title A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography
title_full A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography
title_fullStr A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography
title_full_unstemmed A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography
title_short A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography
title_sort new fractionation and recovery method of viral genomes based on nucleic acid composition and structure using tandem column chromatography
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462933/
https://www.ncbi.nlm.nih.gov/pubmed/26004793
http://dx.doi.org/10.1264/jsme2.ME14174
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