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A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography
Metagenomic studies have revealed the unexplored diversity of the environmental virosphere. However, most studies are biased towards specific types of viral genomes due to the absence of universal methods to access all viral genome types. In the present study, we established a novel system to effici...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI)
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462933/ https://www.ncbi.nlm.nih.gov/pubmed/26004793 http://dx.doi.org/10.1264/jsme2.ME14174 |
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author | Urayama, Syun-ichi Yoshida-Takashima, Yukari Yoshida, Mitsuhiro Tomaru, Yuji Moriyama, Hiromitsu Takai, Ken Nunoura, Takuro |
author_facet | Urayama, Syun-ichi Yoshida-Takashima, Yukari Yoshida, Mitsuhiro Tomaru, Yuji Moriyama, Hiromitsu Takai, Ken Nunoura, Takuro |
author_sort | Urayama, Syun-ichi |
collection | PubMed |
description | Metagenomic studies have revealed the unexplored diversity of the environmental virosphere. However, most studies are biased towards specific types of viral genomes due to the absence of universal methods to access all viral genome types. In the present study, we established a novel system to efficiently separate single- and double-stranded DNA/RNA viral genomes using hydroxyapatite and cellulose chromatography. This method will allow us to quantitatively and simultaneously access four types of viral genomes and will provide important clues to further understand previously unexplored environmental viral populations and obtain potentially unbiased libraries from environmental viral communities. |
format | Online Article Text |
id | pubmed-4462933 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI) |
record_format | MEDLINE/PubMed |
spelling | pubmed-44629332015-06-19 A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography Urayama, Syun-ichi Yoshida-Takashima, Yukari Yoshida, Mitsuhiro Tomaru, Yuji Moriyama, Hiromitsu Takai, Ken Nunoura, Takuro Microbes Environ Short Communication Metagenomic studies have revealed the unexplored diversity of the environmental virosphere. However, most studies are biased towards specific types of viral genomes due to the absence of universal methods to access all viral genome types. In the present study, we established a novel system to efficiently separate single- and double-stranded DNA/RNA viral genomes using hydroxyapatite and cellulose chromatography. This method will allow us to quantitatively and simultaneously access four types of viral genomes and will provide important clues to further understand previously unexplored environmental viral populations and obtain potentially unbiased libraries from environmental viral communities. the Japanese Society of Microbial Ecology (JSME)/the Japanese Society of Soil Microbiology (JSSM)/the Taiwan Society of Microbial Ecology (TSME)/the Japanese Society of Plant Microbe Interactions (JSPMI) 2015-06 2015-05-23 /pmc/articles/PMC4462933/ /pubmed/26004793 http://dx.doi.org/10.1264/jsme2.ME14174 Text en Copyright 2015 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions http://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Communication Urayama, Syun-ichi Yoshida-Takashima, Yukari Yoshida, Mitsuhiro Tomaru, Yuji Moriyama, Hiromitsu Takai, Ken Nunoura, Takuro A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography |
title | A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography |
title_full | A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography |
title_fullStr | A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography |
title_full_unstemmed | A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography |
title_short | A New Fractionation and Recovery Method of Viral Genomes Based on Nucleic Acid Composition and Structure Using Tandem Column Chromatography |
title_sort | new fractionation and recovery method of viral genomes based on nucleic acid composition and structure using tandem column chromatography |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462933/ https://www.ncbi.nlm.nih.gov/pubmed/26004793 http://dx.doi.org/10.1264/jsme2.ME14174 |
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