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Identification and Characterization of a PRDM14 Homolog in Japanese Flounder (Paralichthys olivaceus)

PRDM14 is a PR (PRDI-BF1-RIZ1 homologous) domain protein with six zinc fingers and essential roles in genome-wide epigenetic reprogramming. This protein is required for the establishment of germ cells and the maintenance of the embryonic stem cell ground state. In this study, we cloned the full-leng...

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Autores principales: Fan, Lin, Jiang, Jiajun, Gao, Jinning, Song, Huayu, Liu, Jinxiang, Yang, Likun, Li, Zan, Chen, Yan, Zhang, Quanqi, Wang, Xubo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4463580/
https://www.ncbi.nlm.nih.gov/pubmed/25915026
http://dx.doi.org/10.3390/ijms16059097
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author Fan, Lin
Jiang, Jiajun
Gao, Jinning
Song, Huayu
Liu, Jinxiang
Yang, Likun
Li, Zan
Chen, Yan
Zhang, Quanqi
Wang, Xubo
author_facet Fan, Lin
Jiang, Jiajun
Gao, Jinning
Song, Huayu
Liu, Jinxiang
Yang, Likun
Li, Zan
Chen, Yan
Zhang, Quanqi
Wang, Xubo
author_sort Fan, Lin
collection PubMed
description PRDM14 is a PR (PRDI-BF1-RIZ1 homologous) domain protein with six zinc fingers and essential roles in genome-wide epigenetic reprogramming. This protein is required for the establishment of germ cells and the maintenance of the embryonic stem cell ground state. In this study, we cloned the full-length cDNA and genomic DNA of the Paralichthys olivaceus prdm14 (Po-prdm14) gene and isolated the 5' regulatory region of Po-prdm14 by whole-genome sequencing. Peptide sequence alignment, gene structure analysis, and phylogenetic analysis revealed that Po-PRDM14 was homologous to mammalian PRDM14. Results of real-time quantitative polymerase chain reaction amplification (RT-qPCR) and in situ hybridization (ISH) in embryos demonstrated that Po-prdm14 was highly expressed between the morula and late gastrula stages, with its expression peaking in the early gastrula stage. Relatively low expression of Po-prdm14 was observed in the other developmental stages. ISH of gonadal tissues revealed that the transcripts were located in the nucleus of the oocytes in the ovaries but only in the spermatogonia and not the spermatocytes in the testes. We also presume that the Po-prdm14 transcription factor binding sites and their conserved binding region among vertebrates. The combined results suggest that Po-PRDM14 has a conserved function in teleosts and mammals.
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spelling pubmed-44635802015-06-16 Identification and Characterization of a PRDM14 Homolog in Japanese Flounder (Paralichthys olivaceus) Fan, Lin Jiang, Jiajun Gao, Jinning Song, Huayu Liu, Jinxiang Yang, Likun Li, Zan Chen, Yan Zhang, Quanqi Wang, Xubo Int J Mol Sci Article PRDM14 is a PR (PRDI-BF1-RIZ1 homologous) domain protein with six zinc fingers and essential roles in genome-wide epigenetic reprogramming. This protein is required for the establishment of germ cells and the maintenance of the embryonic stem cell ground state. In this study, we cloned the full-length cDNA and genomic DNA of the Paralichthys olivaceus prdm14 (Po-prdm14) gene and isolated the 5' regulatory region of Po-prdm14 by whole-genome sequencing. Peptide sequence alignment, gene structure analysis, and phylogenetic analysis revealed that Po-PRDM14 was homologous to mammalian PRDM14. Results of real-time quantitative polymerase chain reaction amplification (RT-qPCR) and in situ hybridization (ISH) in embryos demonstrated that Po-prdm14 was highly expressed between the morula and late gastrula stages, with its expression peaking in the early gastrula stage. Relatively low expression of Po-prdm14 was observed in the other developmental stages. ISH of gonadal tissues revealed that the transcripts were located in the nucleus of the oocytes in the ovaries but only in the spermatogonia and not the spermatocytes in the testes. We also presume that the Po-prdm14 transcription factor binding sites and their conserved binding region among vertebrates. The combined results suggest that Po-PRDM14 has a conserved function in teleosts and mammals. MDPI 2015-04-23 /pmc/articles/PMC4463580/ /pubmed/25915026 http://dx.doi.org/10.3390/ijms16059097 Text en © 2015 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Fan, Lin
Jiang, Jiajun
Gao, Jinning
Song, Huayu
Liu, Jinxiang
Yang, Likun
Li, Zan
Chen, Yan
Zhang, Quanqi
Wang, Xubo
Identification and Characterization of a PRDM14 Homolog in Japanese Flounder (Paralichthys olivaceus)
title Identification and Characterization of a PRDM14 Homolog in Japanese Flounder (Paralichthys olivaceus)
title_full Identification and Characterization of a PRDM14 Homolog in Japanese Flounder (Paralichthys olivaceus)
title_fullStr Identification and Characterization of a PRDM14 Homolog in Japanese Flounder (Paralichthys olivaceus)
title_full_unstemmed Identification and Characterization of a PRDM14 Homolog in Japanese Flounder (Paralichthys olivaceus)
title_short Identification and Characterization of a PRDM14 Homolog in Japanese Flounder (Paralichthys olivaceus)
title_sort identification and characterization of a prdm14 homolog in japanese flounder (paralichthys olivaceus)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4463580/
https://www.ncbi.nlm.nih.gov/pubmed/25915026
http://dx.doi.org/10.3390/ijms16059097
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