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A posteriori correction of camera characteristics from large image data sets

Large datasets are emerging in many fields of image processing including: electron microscopy, light microscopy, medical X-ray imaging, astronomy, etc. Novel computer-controlled instrumentation facilitates the collection of very large datasets containing thousands of individual digital images. In si...

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Autores principales: Afanasyev, Pavel, Ravelli, Raimond B. G., Matadeen, Rishi, De Carlo, Sacha, van Duinen, Gijs, Alewijnse, Bart, Peters, Peter J., Abrahams, Jan-Pieter, Portugal, Rodrigo V., Schatz, Michael, van Heel, Marin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4464200/
https://www.ncbi.nlm.nih.gov/pubmed/26068909
http://dx.doi.org/10.1038/srep10317
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author Afanasyev, Pavel
Ravelli, Raimond B. G.
Matadeen, Rishi
De Carlo, Sacha
van Duinen, Gijs
Alewijnse, Bart
Peters, Peter J.
Abrahams, Jan-Pieter
Portugal, Rodrigo V.
Schatz, Michael
van Heel, Marin
author_facet Afanasyev, Pavel
Ravelli, Raimond B. G.
Matadeen, Rishi
De Carlo, Sacha
van Duinen, Gijs
Alewijnse, Bart
Peters, Peter J.
Abrahams, Jan-Pieter
Portugal, Rodrigo V.
Schatz, Michael
van Heel, Marin
author_sort Afanasyev, Pavel
collection PubMed
description Large datasets are emerging in many fields of image processing including: electron microscopy, light microscopy, medical X-ray imaging, astronomy, etc. Novel computer-controlled instrumentation facilitates the collection of very large datasets containing thousands of individual digital images. In single-particle cryogenic electron microscopy (“cryo-EM”), for example, large datasets are required for achieving quasi-atomic resolution structures of biological complexes. Based on the collected data alone, large datasets allow us to precisely determine the statistical properties of the imaging sensor on a pixel-by-pixel basis, independent of any “a priori” normalization routinely applied to the raw image data during collection (“flat field correction”). Our straightforward “a posteriori” correction yields clean linear images as can be verified by Fourier Ring Correlation (FRC), illustrating the statistical independence of the corrected images over all spatial frequencies. The image sensor characteristics can also be measured continuously and used for correcting upcoming images.
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spelling pubmed-44642002015-06-18 A posteriori correction of camera characteristics from large image data sets Afanasyev, Pavel Ravelli, Raimond B. G. Matadeen, Rishi De Carlo, Sacha van Duinen, Gijs Alewijnse, Bart Peters, Peter J. Abrahams, Jan-Pieter Portugal, Rodrigo V. Schatz, Michael van Heel, Marin Sci Rep Article Large datasets are emerging in many fields of image processing including: electron microscopy, light microscopy, medical X-ray imaging, astronomy, etc. Novel computer-controlled instrumentation facilitates the collection of very large datasets containing thousands of individual digital images. In single-particle cryogenic electron microscopy (“cryo-EM”), for example, large datasets are required for achieving quasi-atomic resolution structures of biological complexes. Based on the collected data alone, large datasets allow us to precisely determine the statistical properties of the imaging sensor on a pixel-by-pixel basis, independent of any “a priori” normalization routinely applied to the raw image data during collection (“flat field correction”). Our straightforward “a posteriori” correction yields clean linear images as can be verified by Fourier Ring Correlation (FRC), illustrating the statistical independence of the corrected images over all spatial frequencies. The image sensor characteristics can also be measured continuously and used for correcting upcoming images. Nature Publishing Group 2015-06-11 /pmc/articles/PMC4464200/ /pubmed/26068909 http://dx.doi.org/10.1038/srep10317 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Afanasyev, Pavel
Ravelli, Raimond B. G.
Matadeen, Rishi
De Carlo, Sacha
van Duinen, Gijs
Alewijnse, Bart
Peters, Peter J.
Abrahams, Jan-Pieter
Portugal, Rodrigo V.
Schatz, Michael
van Heel, Marin
A posteriori correction of camera characteristics from large image data sets
title A posteriori correction of camera characteristics from large image data sets
title_full A posteriori correction of camera characteristics from large image data sets
title_fullStr A posteriori correction of camera characteristics from large image data sets
title_full_unstemmed A posteriori correction of camera characteristics from large image data sets
title_short A posteriori correction of camera characteristics from large image data sets
title_sort posteriori correction of camera characteristics from large image data sets
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4464200/
https://www.ncbi.nlm.nih.gov/pubmed/26068909
http://dx.doi.org/10.1038/srep10317
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