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A posteriori correction of camera characteristics from large image data sets
Large datasets are emerging in many fields of image processing including: electron microscopy, light microscopy, medical X-ray imaging, astronomy, etc. Novel computer-controlled instrumentation facilitates the collection of very large datasets containing thousands of individual digital images. In si...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4464200/ https://www.ncbi.nlm.nih.gov/pubmed/26068909 http://dx.doi.org/10.1038/srep10317 |
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author | Afanasyev, Pavel Ravelli, Raimond B. G. Matadeen, Rishi De Carlo, Sacha van Duinen, Gijs Alewijnse, Bart Peters, Peter J. Abrahams, Jan-Pieter Portugal, Rodrigo V. Schatz, Michael van Heel, Marin |
author_facet | Afanasyev, Pavel Ravelli, Raimond B. G. Matadeen, Rishi De Carlo, Sacha van Duinen, Gijs Alewijnse, Bart Peters, Peter J. Abrahams, Jan-Pieter Portugal, Rodrigo V. Schatz, Michael van Heel, Marin |
author_sort | Afanasyev, Pavel |
collection | PubMed |
description | Large datasets are emerging in many fields of image processing including: electron microscopy, light microscopy, medical X-ray imaging, astronomy, etc. Novel computer-controlled instrumentation facilitates the collection of very large datasets containing thousands of individual digital images. In single-particle cryogenic electron microscopy (“cryo-EM”), for example, large datasets are required for achieving quasi-atomic resolution structures of biological complexes. Based on the collected data alone, large datasets allow us to precisely determine the statistical properties of the imaging sensor on a pixel-by-pixel basis, independent of any “a priori” normalization routinely applied to the raw image data during collection (“flat field correction”). Our straightforward “a posteriori” correction yields clean linear images as can be verified by Fourier Ring Correlation (FRC), illustrating the statistical independence of the corrected images over all spatial frequencies. The image sensor characteristics can also be measured continuously and used for correcting upcoming images. |
format | Online Article Text |
id | pubmed-4464200 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-44642002015-06-18 A posteriori correction of camera characteristics from large image data sets Afanasyev, Pavel Ravelli, Raimond B. G. Matadeen, Rishi De Carlo, Sacha van Duinen, Gijs Alewijnse, Bart Peters, Peter J. Abrahams, Jan-Pieter Portugal, Rodrigo V. Schatz, Michael van Heel, Marin Sci Rep Article Large datasets are emerging in many fields of image processing including: electron microscopy, light microscopy, medical X-ray imaging, astronomy, etc. Novel computer-controlled instrumentation facilitates the collection of very large datasets containing thousands of individual digital images. In single-particle cryogenic electron microscopy (“cryo-EM”), for example, large datasets are required for achieving quasi-atomic resolution structures of biological complexes. Based on the collected data alone, large datasets allow us to precisely determine the statistical properties of the imaging sensor on a pixel-by-pixel basis, independent of any “a priori” normalization routinely applied to the raw image data during collection (“flat field correction”). Our straightforward “a posteriori” correction yields clean linear images as can be verified by Fourier Ring Correlation (FRC), illustrating the statistical independence of the corrected images over all spatial frequencies. The image sensor characteristics can also be measured continuously and used for correcting upcoming images. Nature Publishing Group 2015-06-11 /pmc/articles/PMC4464200/ /pubmed/26068909 http://dx.doi.org/10.1038/srep10317 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Afanasyev, Pavel Ravelli, Raimond B. G. Matadeen, Rishi De Carlo, Sacha van Duinen, Gijs Alewijnse, Bart Peters, Peter J. Abrahams, Jan-Pieter Portugal, Rodrigo V. Schatz, Michael van Heel, Marin A posteriori correction of camera characteristics from large image data sets |
title | A posteriori correction of camera characteristics from large image data sets |
title_full | A posteriori correction of camera characteristics from large image data sets |
title_fullStr | A posteriori correction of camera characteristics from large image data sets |
title_full_unstemmed | A posteriori correction of camera characteristics from large image data sets |
title_short | A posteriori correction of camera characteristics from large image data sets |
title_sort | posteriori correction of camera characteristics from large image data sets |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4464200/ https://www.ncbi.nlm.nih.gov/pubmed/26068909 http://dx.doi.org/10.1038/srep10317 |
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