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Gene–gene interactions between TGF-β/Smad3 signalling pathway polymorphisms affect susceptibility to knee osteoarthritis
OBJECTIVE: Transforming growth factor/Smad family member 3 (TGF)-β/Smad3 signalling is essential for maintaining articular cartilage. A relationship between the genetic variants of TGF-β itself, TGF-β signalling and binding molecules, and osteoarthritis (OA) has been reported. Although variants of c...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BMJ Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4466616/ https://www.ncbi.nlm.nih.gov/pubmed/26068512 http://dx.doi.org/10.1136/bmjopen-2015-007931 |
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author | Su, Sui-Lung Yang, Hsin-Yi Lee, Herng-Sheng Huang, Guo-Shu Lee, Chian-Her Liu, Wan-Shan Wang, Chih-Chien Peng, Yi-Jen Lai, Ching-Huang Chen, Ching-Yang Lin, Chin Pan, Yu-Ting Salter, Donald M Chen, Hsiang-Cheng |
author_facet | Su, Sui-Lung Yang, Hsin-Yi Lee, Herng-Sheng Huang, Guo-Shu Lee, Chian-Her Liu, Wan-Shan Wang, Chih-Chien Peng, Yi-Jen Lai, Ching-Huang Chen, Ching-Yang Lin, Chin Pan, Yu-Ting Salter, Donald M Chen, Hsiang-Cheng |
author_sort | Su, Sui-Lung |
collection | PubMed |
description | OBJECTIVE: Transforming growth factor/Smad family member 3 (TGF)-β/Smad3 signalling is essential for maintaining articular cartilage. A relationship between the genetic variants of TGF-β itself, TGF-β signalling and binding molecules, and osteoarthritis (OA) has been reported. Although variants of candidate genes have become prime targets for genetic analysis, their detailed interplay has not been documented. Our goal was to establish whether single nucleotide polymorphisms (SNPs) of TGF-β1, TGF-βRI, Smad3 and tissue inhibitor of metalloproteinases 3 (TIMP3), and their interactions, are associated with knee OA. DESIGN: We performed a case–control association study and genotyped 518 knee patients with OA and 468 healthy controls. All participants were genotyped for TGF-β1 (rs1800469C/T), TGF-βRI (rs1590A/G), Smad3 (rs12901499A/G and rs6494629T/C), and TIMP3 (rs715572G/A and rs1962223G/C) polymorphisms by polymerase chain reaction–restriction fragment length polymorphism analysis. Multifactor dimensionality reduction (MDR) was used to identify gene–gene interactions. RESULTS: Significant associations were observed for TIMP3 rs715572G/A polymorphisms in knee patients with OA and healthy individuals. The GA heterozygote in TIMP3 (rs715572G/A) was significantly associated with OA (p=0.007). Patient stratification using the Kellgren–Lawrence grading scale showed significant differences in TIMP3 rs715572G/A genotypes between grade 4 knee OA and controls. By MDR analysis, a two-locus model (Smad3 rs6494629T/C and TIMP3 rs715572G/A) of gene–gene interaction was the best for predicting knee OA risk, and its maximum testing accuracy was 57.55% and maximum cross-validation consistency was 10/10. CONCLUSIONS: TIMP3 rs715572G/A is a candidate protective gene for severe knee OA. Gene–gene interactions between Smad3 rs6494629T/C and TIMP3 rs715572G/A polymorphisms may play more important protective roles in knee OA. |
format | Online Article Text |
id | pubmed-4466616 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BMJ Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-44666162015-06-17 Gene–gene interactions between TGF-β/Smad3 signalling pathway polymorphisms affect susceptibility to knee osteoarthritis Su, Sui-Lung Yang, Hsin-Yi Lee, Herng-Sheng Huang, Guo-Shu Lee, Chian-Her Liu, Wan-Shan Wang, Chih-Chien Peng, Yi-Jen Lai, Ching-Huang Chen, Ching-Yang Lin, Chin Pan, Yu-Ting Salter, Donald M Chen, Hsiang-Cheng BMJ Open Rheumatology OBJECTIVE: Transforming growth factor/Smad family member 3 (TGF)-β/Smad3 signalling is essential for maintaining articular cartilage. A relationship between the genetic variants of TGF-β itself, TGF-β signalling and binding molecules, and osteoarthritis (OA) has been reported. Although variants of candidate genes have become prime targets for genetic analysis, their detailed interplay has not been documented. Our goal was to establish whether single nucleotide polymorphisms (SNPs) of TGF-β1, TGF-βRI, Smad3 and tissue inhibitor of metalloproteinases 3 (TIMP3), and their interactions, are associated with knee OA. DESIGN: We performed a case–control association study and genotyped 518 knee patients with OA and 468 healthy controls. All participants were genotyped for TGF-β1 (rs1800469C/T), TGF-βRI (rs1590A/G), Smad3 (rs12901499A/G and rs6494629T/C), and TIMP3 (rs715572G/A and rs1962223G/C) polymorphisms by polymerase chain reaction–restriction fragment length polymorphism analysis. Multifactor dimensionality reduction (MDR) was used to identify gene–gene interactions. RESULTS: Significant associations were observed for TIMP3 rs715572G/A polymorphisms in knee patients with OA and healthy individuals. The GA heterozygote in TIMP3 (rs715572G/A) was significantly associated with OA (p=0.007). Patient stratification using the Kellgren–Lawrence grading scale showed significant differences in TIMP3 rs715572G/A genotypes between grade 4 knee OA and controls. By MDR analysis, a two-locus model (Smad3 rs6494629T/C and TIMP3 rs715572G/A) of gene–gene interaction was the best for predicting knee OA risk, and its maximum testing accuracy was 57.55% and maximum cross-validation consistency was 10/10. CONCLUSIONS: TIMP3 rs715572G/A is a candidate protective gene for severe knee OA. Gene–gene interactions between Smad3 rs6494629T/C and TIMP3 rs715572G/A polymorphisms may play more important protective roles in knee OA. BMJ Publishing Group 2015-06-11 /pmc/articles/PMC4466616/ /pubmed/26068512 http://dx.doi.org/10.1136/bmjopen-2015-007931 Text en Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions This is an Open Access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ |
spellingShingle | Rheumatology Su, Sui-Lung Yang, Hsin-Yi Lee, Herng-Sheng Huang, Guo-Shu Lee, Chian-Her Liu, Wan-Shan Wang, Chih-Chien Peng, Yi-Jen Lai, Ching-Huang Chen, Ching-Yang Lin, Chin Pan, Yu-Ting Salter, Donald M Chen, Hsiang-Cheng Gene–gene interactions between TGF-β/Smad3 signalling pathway polymorphisms affect susceptibility to knee osteoarthritis |
title | Gene–gene interactions between TGF-β/Smad3 signalling pathway polymorphisms affect susceptibility to knee osteoarthritis |
title_full | Gene–gene interactions between TGF-β/Smad3 signalling pathway polymorphisms affect susceptibility to knee osteoarthritis |
title_fullStr | Gene–gene interactions between TGF-β/Smad3 signalling pathway polymorphisms affect susceptibility to knee osteoarthritis |
title_full_unstemmed | Gene–gene interactions between TGF-β/Smad3 signalling pathway polymorphisms affect susceptibility to knee osteoarthritis |
title_short | Gene–gene interactions between TGF-β/Smad3 signalling pathway polymorphisms affect susceptibility to knee osteoarthritis |
title_sort | gene–gene interactions between tgf-β/smad3 signalling pathway polymorphisms affect susceptibility to knee osteoarthritis |
topic | Rheumatology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4466616/ https://www.ncbi.nlm.nih.gov/pubmed/26068512 http://dx.doi.org/10.1136/bmjopen-2015-007931 |
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