Cargando…
The cerebellum ages slowly according to the epigenetic clock
Studies that elucidate why some human tissues age faster than others may shed light on how we age, and ultimately suggest what interventions may be possible. Here we utilize a recent biomarker of aging (referred to as epigenetic clock) to assess the epigenetic ages of up to 30 anatomic sites from su...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4468311/ https://www.ncbi.nlm.nih.gov/pubmed/26000617 |
_version_ | 1782376489072721920 |
---|---|
author | Horvath, Steve Mah, Vei Lu, Ake T. Woo, Jennifer S. Choi, Oi-Wa Jasinska, Anna J. Riancho, José A. Tung, Spencer Coles, Natalie S. Braun, Jonathan Vinters, Harry V. Coles, L. Stephen |
author_facet | Horvath, Steve Mah, Vei Lu, Ake T. Woo, Jennifer S. Choi, Oi-Wa Jasinska, Anna J. Riancho, José A. Tung, Spencer Coles, Natalie S. Braun, Jonathan Vinters, Harry V. Coles, L. Stephen |
author_sort | Horvath, Steve |
collection | PubMed |
description | Studies that elucidate why some human tissues age faster than others may shed light on how we age, and ultimately suggest what interventions may be possible. Here we utilize a recent biomarker of aging (referred to as epigenetic clock) to assess the epigenetic ages of up to 30 anatomic sites from supercentenarians (subjects who reached an age of 110 or older) and younger subjects. Using three novel and three published human DNA methylation data sets, we demonstrate that the cerebellum ages more slowly than other parts of the human body. We used both transcriptional data and genetic data to elucidate molecular mechanisms which may explain this finding. The two largest superfamilies of helicases (SF1 and SF2) are significantly over-represented (p=9.2×10(−9)) among gene transcripts that are over-expressed in the cerebellum compared to other brain regions from the same subject. Furthermore, SNPs that are associated with epigenetic age acceleration in the cerebellum tend to be located near genes from helicase superfamilies SF1 and SF2 (enrichment p=5.8×10(−3)). Our genetic and transcriptional studies of epigenetic age acceleration support the hypothesis that the slow aging rate of the cerebellum is due to processes that involve RNA helicases. |
format | Online Article Text |
id | pubmed-4468311 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-44683112015-06-19 The cerebellum ages slowly according to the epigenetic clock Horvath, Steve Mah, Vei Lu, Ake T. Woo, Jennifer S. Choi, Oi-Wa Jasinska, Anna J. Riancho, José A. Tung, Spencer Coles, Natalie S. Braun, Jonathan Vinters, Harry V. Coles, L. Stephen Aging (Albany NY) Research Paper Studies that elucidate why some human tissues age faster than others may shed light on how we age, and ultimately suggest what interventions may be possible. Here we utilize a recent biomarker of aging (referred to as epigenetic clock) to assess the epigenetic ages of up to 30 anatomic sites from supercentenarians (subjects who reached an age of 110 or older) and younger subjects. Using three novel and three published human DNA methylation data sets, we demonstrate that the cerebellum ages more slowly than other parts of the human body. We used both transcriptional data and genetic data to elucidate molecular mechanisms which may explain this finding. The two largest superfamilies of helicases (SF1 and SF2) are significantly over-represented (p=9.2×10(−9)) among gene transcripts that are over-expressed in the cerebellum compared to other brain regions from the same subject. Furthermore, SNPs that are associated with epigenetic age acceleration in the cerebellum tend to be located near genes from helicase superfamilies SF1 and SF2 (enrichment p=5.8×10(−3)). Our genetic and transcriptional studies of epigenetic age acceleration support the hypothesis that the slow aging rate of the cerebellum is due to processes that involve RNA helicases. Impact Journals LLC 2015-05-11 /pmc/articles/PMC4468311/ /pubmed/26000617 Text en Copyright: © 2015 Horvath et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited |
spellingShingle | Research Paper Horvath, Steve Mah, Vei Lu, Ake T. Woo, Jennifer S. Choi, Oi-Wa Jasinska, Anna J. Riancho, José A. Tung, Spencer Coles, Natalie S. Braun, Jonathan Vinters, Harry V. Coles, L. Stephen The cerebellum ages slowly according to the epigenetic clock |
title | The cerebellum ages slowly according to the epigenetic clock |
title_full | The cerebellum ages slowly according to the epigenetic clock |
title_fullStr | The cerebellum ages slowly according to the epigenetic clock |
title_full_unstemmed | The cerebellum ages slowly according to the epigenetic clock |
title_short | The cerebellum ages slowly according to the epigenetic clock |
title_sort | cerebellum ages slowly according to the epigenetic clock |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4468311/ https://www.ncbi.nlm.nih.gov/pubmed/26000617 |
work_keys_str_mv | AT horvathsteve thecerebellumagesslowlyaccordingtotheepigeneticclock AT mahvei thecerebellumagesslowlyaccordingtotheepigeneticclock AT luaket thecerebellumagesslowlyaccordingtotheepigeneticclock AT woojennifers thecerebellumagesslowlyaccordingtotheepigeneticclock AT choioiwa thecerebellumagesslowlyaccordingtotheepigeneticclock AT jasinskaannaj thecerebellumagesslowlyaccordingtotheepigeneticclock AT rianchojosea thecerebellumagesslowlyaccordingtotheepigeneticclock AT tungspencer thecerebellumagesslowlyaccordingtotheepigeneticclock AT colesnatalies thecerebellumagesslowlyaccordingtotheepigeneticclock AT braunjonathan thecerebellumagesslowlyaccordingtotheepigeneticclock AT vintersharryv thecerebellumagesslowlyaccordingtotheepigeneticclock AT coleslstephen thecerebellumagesslowlyaccordingtotheepigeneticclock AT horvathsteve cerebellumagesslowlyaccordingtotheepigeneticclock AT mahvei cerebellumagesslowlyaccordingtotheepigeneticclock AT luaket cerebellumagesslowlyaccordingtotheepigeneticclock AT woojennifers cerebellumagesslowlyaccordingtotheepigeneticclock AT choioiwa cerebellumagesslowlyaccordingtotheepigeneticclock AT jasinskaannaj cerebellumagesslowlyaccordingtotheepigeneticclock AT rianchojosea cerebellumagesslowlyaccordingtotheepigeneticclock AT tungspencer cerebellumagesslowlyaccordingtotheepigeneticclock AT colesnatalies cerebellumagesslowlyaccordingtotheepigeneticclock AT braunjonathan cerebellumagesslowlyaccordingtotheepigeneticclock AT vintersharryv cerebellumagesslowlyaccordingtotheepigeneticclock AT coleslstephen cerebellumagesslowlyaccordingtotheepigeneticclock |