Cargando…

The cerebellum ages slowly according to the epigenetic clock

Studies that elucidate why some human tissues age faster than others may shed light on how we age, and ultimately suggest what interventions may be possible. Here we utilize a recent biomarker of aging (referred to as epigenetic clock) to assess the epigenetic ages of up to 30 anatomic sites from su...

Descripción completa

Detalles Bibliográficos
Autores principales: Horvath, Steve, Mah, Vei, Lu, Ake T., Woo, Jennifer S., Choi, Oi-Wa, Jasinska, Anna J., Riancho, José A., Tung, Spencer, Coles, Natalie S., Braun, Jonathan, Vinters, Harry V., Coles, L. Stephen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4468311/
https://www.ncbi.nlm.nih.gov/pubmed/26000617
_version_ 1782376489072721920
author Horvath, Steve
Mah, Vei
Lu, Ake T.
Woo, Jennifer S.
Choi, Oi-Wa
Jasinska, Anna J.
Riancho, José A.
Tung, Spencer
Coles, Natalie S.
Braun, Jonathan
Vinters, Harry V.
Coles, L. Stephen
author_facet Horvath, Steve
Mah, Vei
Lu, Ake T.
Woo, Jennifer S.
Choi, Oi-Wa
Jasinska, Anna J.
Riancho, José A.
Tung, Spencer
Coles, Natalie S.
Braun, Jonathan
Vinters, Harry V.
Coles, L. Stephen
author_sort Horvath, Steve
collection PubMed
description Studies that elucidate why some human tissues age faster than others may shed light on how we age, and ultimately suggest what interventions may be possible. Here we utilize a recent biomarker of aging (referred to as epigenetic clock) to assess the epigenetic ages of up to 30 anatomic sites from supercentenarians (subjects who reached an age of 110 or older) and younger subjects. Using three novel and three published human DNA methylation data sets, we demonstrate that the cerebellum ages more slowly than other parts of the human body. We used both transcriptional data and genetic data to elucidate molecular mechanisms which may explain this finding. The two largest superfamilies of helicases (SF1 and SF2) are significantly over-represented (p=9.2×10(−9)) among gene transcripts that are over-expressed in the cerebellum compared to other brain regions from the same subject. Furthermore, SNPs that are associated with epigenetic age acceleration in the cerebellum tend to be located near genes from helicase superfamilies SF1 and SF2 (enrichment p=5.8×10(−3)). Our genetic and transcriptional studies of epigenetic age acceleration support the hypothesis that the slow aging rate of the cerebellum is due to processes that involve RNA helicases.
format Online
Article
Text
id pubmed-4468311
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Impact Journals LLC
record_format MEDLINE/PubMed
spelling pubmed-44683112015-06-19 The cerebellum ages slowly according to the epigenetic clock Horvath, Steve Mah, Vei Lu, Ake T. Woo, Jennifer S. Choi, Oi-Wa Jasinska, Anna J. Riancho, José A. Tung, Spencer Coles, Natalie S. Braun, Jonathan Vinters, Harry V. Coles, L. Stephen Aging (Albany NY) Research Paper Studies that elucidate why some human tissues age faster than others may shed light on how we age, and ultimately suggest what interventions may be possible. Here we utilize a recent biomarker of aging (referred to as epigenetic clock) to assess the epigenetic ages of up to 30 anatomic sites from supercentenarians (subjects who reached an age of 110 or older) and younger subjects. Using three novel and three published human DNA methylation data sets, we demonstrate that the cerebellum ages more slowly than other parts of the human body. We used both transcriptional data and genetic data to elucidate molecular mechanisms which may explain this finding. The two largest superfamilies of helicases (SF1 and SF2) are significantly over-represented (p=9.2×10(−9)) among gene transcripts that are over-expressed in the cerebellum compared to other brain regions from the same subject. Furthermore, SNPs that are associated with epigenetic age acceleration in the cerebellum tend to be located near genes from helicase superfamilies SF1 and SF2 (enrichment p=5.8×10(−3)). Our genetic and transcriptional studies of epigenetic age acceleration support the hypothesis that the slow aging rate of the cerebellum is due to processes that involve RNA helicases. Impact Journals LLC 2015-05-11 /pmc/articles/PMC4468311/ /pubmed/26000617 Text en Copyright: © 2015 Horvath et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
spellingShingle Research Paper
Horvath, Steve
Mah, Vei
Lu, Ake T.
Woo, Jennifer S.
Choi, Oi-Wa
Jasinska, Anna J.
Riancho, José A.
Tung, Spencer
Coles, Natalie S.
Braun, Jonathan
Vinters, Harry V.
Coles, L. Stephen
The cerebellum ages slowly according to the epigenetic clock
title The cerebellum ages slowly according to the epigenetic clock
title_full The cerebellum ages slowly according to the epigenetic clock
title_fullStr The cerebellum ages slowly according to the epigenetic clock
title_full_unstemmed The cerebellum ages slowly according to the epigenetic clock
title_short The cerebellum ages slowly according to the epigenetic clock
title_sort cerebellum ages slowly according to the epigenetic clock
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4468311/
https://www.ncbi.nlm.nih.gov/pubmed/26000617
work_keys_str_mv AT horvathsteve thecerebellumagesslowlyaccordingtotheepigeneticclock
AT mahvei thecerebellumagesslowlyaccordingtotheepigeneticclock
AT luaket thecerebellumagesslowlyaccordingtotheepigeneticclock
AT woojennifers thecerebellumagesslowlyaccordingtotheepigeneticclock
AT choioiwa thecerebellumagesslowlyaccordingtotheepigeneticclock
AT jasinskaannaj thecerebellumagesslowlyaccordingtotheepigeneticclock
AT rianchojosea thecerebellumagesslowlyaccordingtotheepigeneticclock
AT tungspencer thecerebellumagesslowlyaccordingtotheepigeneticclock
AT colesnatalies thecerebellumagesslowlyaccordingtotheepigeneticclock
AT braunjonathan thecerebellumagesslowlyaccordingtotheepigeneticclock
AT vintersharryv thecerebellumagesslowlyaccordingtotheepigeneticclock
AT coleslstephen thecerebellumagesslowlyaccordingtotheepigeneticclock
AT horvathsteve cerebellumagesslowlyaccordingtotheepigeneticclock
AT mahvei cerebellumagesslowlyaccordingtotheepigeneticclock
AT luaket cerebellumagesslowlyaccordingtotheepigeneticclock
AT woojennifers cerebellumagesslowlyaccordingtotheepigeneticclock
AT choioiwa cerebellumagesslowlyaccordingtotheepigeneticclock
AT jasinskaannaj cerebellumagesslowlyaccordingtotheepigeneticclock
AT rianchojosea cerebellumagesslowlyaccordingtotheepigeneticclock
AT tungspencer cerebellumagesslowlyaccordingtotheepigeneticclock
AT colesnatalies cerebellumagesslowlyaccordingtotheepigeneticclock
AT braunjonathan cerebellumagesslowlyaccordingtotheepigeneticclock
AT vintersharryv cerebellumagesslowlyaccordingtotheepigeneticclock
AT coleslstephen cerebellumagesslowlyaccordingtotheepigeneticclock