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Faster title and abstract screening? Evaluating Abstrackr, a semi-automated online screening program for systematic reviewers

BACKGROUND: Citation screening is time consuming and inefficient. We sought to evaluate the performance of Abstrackr, a semi-automated online tool for predictive title and abstract screening. METHODS: Four systematic reviews (aHUS, dietary fibre, ECHO, rituximab) were used to evaluate Abstrackr. Cit...

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Autores principales: Rathbone, John, Hoffmann, Tammy, Glasziou, Paul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4472176/
https://www.ncbi.nlm.nih.gov/pubmed/26073974
http://dx.doi.org/10.1186/s13643-015-0067-6
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author Rathbone, John
Hoffmann, Tammy
Glasziou, Paul
author_facet Rathbone, John
Hoffmann, Tammy
Glasziou, Paul
author_sort Rathbone, John
collection PubMed
description BACKGROUND: Citation screening is time consuming and inefficient. We sought to evaluate the performance of Abstrackr, a semi-automated online tool for predictive title and abstract screening. METHODS: Four systematic reviews (aHUS, dietary fibre, ECHO, rituximab) were used to evaluate Abstrackr. Citations from electronic searches of biomedical databases were imported into Abstrackr, and titles and abstracts were screened and included or excluded according to the entry criteria. This process was continued until Abstrackr predicted and classified the remaining unscreened citations as relevant or irrelevant. These classification predictions were checked for accuracy against the original review decisions. Sensitivity analyses were performed to assess the effects of including case reports in the aHUS dataset whilst screening and the effects of using larger imbalanced datasets with the ECHO dataset. The performance of Abstrackr was calculated according to the number of relevant studies missed, the workload saving, the false negative rate, and the precision of the algorithm to correctly predict relevant studies for inclusion, i.e. further full text inspection. RESULTS: Of the unscreened citations, Abstrackr’s prediction algorithm correctly identified all relevant citations for the rituximab and dietary fibre reviews. However, one relevant citation in both the aHUS and ECHO reviews was incorrectly predicted as not relevant. The workload saving achieved with Abstrackr varied depending on the complexity and size of the reviews (9 % rituximab, 40 % dietary fibre, 67 % aHUS, and 57 % ECHO). The proportion of citations predicted as relevant, and therefore, warranting further full text inspection (i.e. the precision of the prediction) ranged from 16 % (aHUS) to 45 % (rituximab) and was affected by the complexity of the reviews. The false negative rate ranged from 2.4 to 21.7 %. Sensitivity analysis performed on the aHUS dataset increased the precision from 16 to 25 % and increased the workload saving by 10 % but increased the number of relevant studies missed. Sensitivity analysis performed with the larger ECHO dataset increased the workload saving (80 %) but reduced the precision (6.8 %) and increased the number of missed citations. CONCLUSIONS: Semi-automated title and abstract screening with Abstrackr has the potential to save time and reduce research waste.
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spelling pubmed-44721762015-06-19 Faster title and abstract screening? Evaluating Abstrackr, a semi-automated online screening program for systematic reviewers Rathbone, John Hoffmann, Tammy Glasziou, Paul Syst Rev Research BACKGROUND: Citation screening is time consuming and inefficient. We sought to evaluate the performance of Abstrackr, a semi-automated online tool for predictive title and abstract screening. METHODS: Four systematic reviews (aHUS, dietary fibre, ECHO, rituximab) were used to evaluate Abstrackr. Citations from electronic searches of biomedical databases were imported into Abstrackr, and titles and abstracts were screened and included or excluded according to the entry criteria. This process was continued until Abstrackr predicted and classified the remaining unscreened citations as relevant or irrelevant. These classification predictions were checked for accuracy against the original review decisions. Sensitivity analyses were performed to assess the effects of including case reports in the aHUS dataset whilst screening and the effects of using larger imbalanced datasets with the ECHO dataset. The performance of Abstrackr was calculated according to the number of relevant studies missed, the workload saving, the false negative rate, and the precision of the algorithm to correctly predict relevant studies for inclusion, i.e. further full text inspection. RESULTS: Of the unscreened citations, Abstrackr’s prediction algorithm correctly identified all relevant citations for the rituximab and dietary fibre reviews. However, one relevant citation in both the aHUS and ECHO reviews was incorrectly predicted as not relevant. The workload saving achieved with Abstrackr varied depending on the complexity and size of the reviews (9 % rituximab, 40 % dietary fibre, 67 % aHUS, and 57 % ECHO). The proportion of citations predicted as relevant, and therefore, warranting further full text inspection (i.e. the precision of the prediction) ranged from 16 % (aHUS) to 45 % (rituximab) and was affected by the complexity of the reviews. The false negative rate ranged from 2.4 to 21.7 %. Sensitivity analysis performed on the aHUS dataset increased the precision from 16 to 25 % and increased the workload saving by 10 % but increased the number of relevant studies missed. Sensitivity analysis performed with the larger ECHO dataset increased the workload saving (80 %) but reduced the precision (6.8 %) and increased the number of missed citations. CONCLUSIONS: Semi-automated title and abstract screening with Abstrackr has the potential to save time and reduce research waste. BioMed Central 2015-06-15 /pmc/articles/PMC4472176/ /pubmed/26073974 http://dx.doi.org/10.1186/s13643-015-0067-6 Text en © Rathbone et al. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Rathbone, John
Hoffmann, Tammy
Glasziou, Paul
Faster title and abstract screening? Evaluating Abstrackr, a semi-automated online screening program for systematic reviewers
title Faster title and abstract screening? Evaluating Abstrackr, a semi-automated online screening program for systematic reviewers
title_full Faster title and abstract screening? Evaluating Abstrackr, a semi-automated online screening program for systematic reviewers
title_fullStr Faster title and abstract screening? Evaluating Abstrackr, a semi-automated online screening program for systematic reviewers
title_full_unstemmed Faster title and abstract screening? Evaluating Abstrackr, a semi-automated online screening program for systematic reviewers
title_short Faster title and abstract screening? Evaluating Abstrackr, a semi-automated online screening program for systematic reviewers
title_sort faster title and abstract screening? evaluating abstrackr, a semi-automated online screening program for systematic reviewers
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4472176/
https://www.ncbi.nlm.nih.gov/pubmed/26073974
http://dx.doi.org/10.1186/s13643-015-0067-6
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