Cargando…

Determination of arginine catabolism by salivary pellet()

To determine the formation of ammonium from arginine by oral bacteria residing in saliva and dental plaque, an arginolytic activity assay based on the work described by Nascimento et al. [2] was developed. Following the original methodology, insufficient ammonium production could be determined. To i...

Descripción completa

Detalles Bibliográficos
Autores principales: Hoogenkamp, M.A., ten Cate, J.M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4472835/
https://www.ncbi.nlm.nih.gov/pubmed/26150926
http://dx.doi.org/10.1016/j.mex.2014.01.001
_version_ 1782377126372048896
author Hoogenkamp, M.A.
ten Cate, J.M.
author_facet Hoogenkamp, M.A.
ten Cate, J.M.
author_sort Hoogenkamp, M.A.
collection PubMed
description To determine the formation of ammonium from arginine by oral bacteria residing in saliva and dental plaque, an arginolytic activity assay based on the work described by Nascimento et al. [2] was developed. Following the original methodology, insufficient ammonium production could be determined. To improve the method for our research goal, the following modifications were made to the original protocols: • The following changes were made to the arginine catabolism assay resulting in a 1000-fold increase in sensitivity: (i) the salivary pellet was washed and concentrated five times resulting in the removal of low density compounds interfering with the assay, (ii) the pH of the Tris–maleate buffer was increased from 6.0 to 7.5 resulting in a better conversion of arginine to ammonium and (iii) the incubation time was increased to 3 h to ensure that non-responders and salivary pellets low in cell numbers could yield detectable levels of ammonium. • Removal of a centrifuge step from the protein determination resulted in a higher protein yield improving the accuracy of the assay. • Changing from the use of the toxic, environmentally hazardous, mercury containing Nessler's reagent to a colorimetric enzyme assay achieved a safer and greener determination of ammonium concentration.
format Online
Article
Text
id pubmed-4472835
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-44728352015-07-06 Determination of arginine catabolism by salivary pellet() Hoogenkamp, M.A. ten Cate, J.M. MethodsX Article To determine the formation of ammonium from arginine by oral bacteria residing in saliva and dental plaque, an arginolytic activity assay based on the work described by Nascimento et al. [2] was developed. Following the original methodology, insufficient ammonium production could be determined. To improve the method for our research goal, the following modifications were made to the original protocols: • The following changes were made to the arginine catabolism assay resulting in a 1000-fold increase in sensitivity: (i) the salivary pellet was washed and concentrated five times resulting in the removal of low density compounds interfering with the assay, (ii) the pH of the Tris–maleate buffer was increased from 6.0 to 7.5 resulting in a better conversion of arginine to ammonium and (iii) the incubation time was increased to 3 h to ensure that non-responders and salivary pellets low in cell numbers could yield detectable levels of ammonium. • Removal of a centrifuge step from the protein determination resulted in a higher protein yield improving the accuracy of the assay. • Changing from the use of the toxic, environmentally hazardous, mercury containing Nessler's reagent to a colorimetric enzyme assay achieved a safer and greener determination of ammonium concentration. Elsevier 2014-01-22 /pmc/articles/PMC4472835/ /pubmed/26150926 http://dx.doi.org/10.1016/j.mex.2014.01.001 Text en © 2014 The Authors http://creativecommons.org/licenses/by/3.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Hoogenkamp, M.A.
ten Cate, J.M.
Determination of arginine catabolism by salivary pellet()
title Determination of arginine catabolism by salivary pellet()
title_full Determination of arginine catabolism by salivary pellet()
title_fullStr Determination of arginine catabolism by salivary pellet()
title_full_unstemmed Determination of arginine catabolism by salivary pellet()
title_short Determination of arginine catabolism by salivary pellet()
title_sort determination of arginine catabolism by salivary pellet()
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4472835/
https://www.ncbi.nlm.nih.gov/pubmed/26150926
http://dx.doi.org/10.1016/j.mex.2014.01.001
work_keys_str_mv AT hoogenkampma determinationofargininecatabolismbysalivarypellet
AT tencatejm determinationofargininecatabolismbysalivarypellet