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Probing DNA Helicase Kinetics with Temperature‐Controlled Magnetic Tweezers

Motor protein functions like adenosine triphosphate (ATP) hydrolysis or translocation along molecular substrates take place at nanometric scales and consequently depend on the amount of available thermal energy. The associated rates can hence be investigated by actively varying the temperature condi...

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Autores principales: Gollnick, Benjamin, Carrasco, Carolina, Zuttion, Francesca, Gilhooly, Neville S., Dillingham, Mark S., Moreno‐Herrero, Fernando
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4473356/
https://www.ncbi.nlm.nih.gov/pubmed/25400244
http://dx.doi.org/10.1002/smll.201402686
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author Gollnick, Benjamin
Carrasco, Carolina
Zuttion, Francesca
Gilhooly, Neville S.
Dillingham, Mark S.
Moreno‐Herrero, Fernando
author_facet Gollnick, Benjamin
Carrasco, Carolina
Zuttion, Francesca
Gilhooly, Neville S.
Dillingham, Mark S.
Moreno‐Herrero, Fernando
author_sort Gollnick, Benjamin
collection PubMed
description Motor protein functions like adenosine triphosphate (ATP) hydrolysis or translocation along molecular substrates take place at nanometric scales and consequently depend on the amount of available thermal energy. The associated rates can hence be investigated by actively varying the temperature conditions. In this article, a thermally controlled magnetic tweezers (MT) system for single‐molecule experiments at up to 40 °C is presented. Its compact thermostat module yields a precision of 0.1 °C and can in principle be tailored to any other surface‐coupled microscopy technique, such as tethered particle motion (TPM), nanopore‐based sensing of biomolecules, or super‐resolution fluorescence imaging. The instrument is used to examine the temperature dependence of translocation along double‐stranded (ds)DNA by individual copies of the protein complex AddAB, a helicase‐nuclease motor involved in dsDNA break repair. Despite moderately lower mean velocities measured at sub‐saturating ATP concentrations, almost identical estimates of the enzymatic reaction barrier (around 21–24 k (B) T) are obtained by comparing results from MT and stopped‐flow bulk assays. Single‐molecule rates approach ensemble values at optimized chemical energy conditions near the motor, which can withstand opposing loads of up to 14 piconewtons (pN). Having proven its reliability, the temperature‐controlled MT described herein will eventually represent a routinely applied method within the toolbox for nano‐biotechnology.
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spelling pubmed-44733562015-06-24 Probing DNA Helicase Kinetics with Temperature‐Controlled Magnetic Tweezers Gollnick, Benjamin Carrasco, Carolina Zuttion, Francesca Gilhooly, Neville S. Dillingham, Mark S. Moreno‐Herrero, Fernando Small Full Papers Motor protein functions like adenosine triphosphate (ATP) hydrolysis or translocation along molecular substrates take place at nanometric scales and consequently depend on the amount of available thermal energy. The associated rates can hence be investigated by actively varying the temperature conditions. In this article, a thermally controlled magnetic tweezers (MT) system for single‐molecule experiments at up to 40 °C is presented. Its compact thermostat module yields a precision of 0.1 °C and can in principle be tailored to any other surface‐coupled microscopy technique, such as tethered particle motion (TPM), nanopore‐based sensing of biomolecules, or super‐resolution fluorescence imaging. The instrument is used to examine the temperature dependence of translocation along double‐stranded (ds)DNA by individual copies of the protein complex AddAB, a helicase‐nuclease motor involved in dsDNA break repair. Despite moderately lower mean velocities measured at sub‐saturating ATP concentrations, almost identical estimates of the enzymatic reaction barrier (around 21–24 k (B) T) are obtained by comparing results from MT and stopped‐flow bulk assays. Single‐molecule rates approach ensemble values at optimized chemical energy conditions near the motor, which can withstand opposing loads of up to 14 piconewtons (pN). Having proven its reliability, the temperature‐controlled MT described herein will eventually represent a routinely applied method within the toolbox for nano‐biotechnology. John Wiley and Sons Inc. 2014-11-14 2015-03-12 /pmc/articles/PMC4473356/ /pubmed/25400244 http://dx.doi.org/10.1002/smll.201402686 Text en © 2014 The Authors. Published by WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Gollnick, Benjamin
Carrasco, Carolina
Zuttion, Francesca
Gilhooly, Neville S.
Dillingham, Mark S.
Moreno‐Herrero, Fernando
Probing DNA Helicase Kinetics with Temperature‐Controlled Magnetic Tweezers
title Probing DNA Helicase Kinetics with Temperature‐Controlled Magnetic Tweezers
title_full Probing DNA Helicase Kinetics with Temperature‐Controlled Magnetic Tweezers
title_fullStr Probing DNA Helicase Kinetics with Temperature‐Controlled Magnetic Tweezers
title_full_unstemmed Probing DNA Helicase Kinetics with Temperature‐Controlled Magnetic Tweezers
title_short Probing DNA Helicase Kinetics with Temperature‐Controlled Magnetic Tweezers
title_sort probing dna helicase kinetics with temperature‐controlled magnetic tweezers
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4473356/
https://www.ncbi.nlm.nih.gov/pubmed/25400244
http://dx.doi.org/10.1002/smll.201402686
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