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Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph
Unlike the western medical approach where a drug is prescribed against specific symptoms of patients, traditional Chinese medicine (TCM) treatment has a unique step, which is called syndrome differentiation (SD). It is argued that SD is considered as patient classification because prior to the selec...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4475711/ https://www.ncbi.nlm.nih.gov/pubmed/26167191 http://dx.doi.org/10.1155/2015/435085 |
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author | Chen, Jinpeng Poon, Josiah Poon, Simon K. Xu, Ling Sze, Daniel M. Y. |
author_facet | Chen, Jinpeng Poon, Josiah Poon, Simon K. Xu, Ling Sze, Daniel M. Y. |
author_sort | Chen, Jinpeng |
collection | PubMed |
description | Unlike the western medical approach where a drug is prescribed against specific symptoms of patients, traditional Chinese medicine (TCM) treatment has a unique step, which is called syndrome differentiation (SD). It is argued that SD is considered as patient classification because prior to the selection of the most appropriate formula from a set of relevant formulae for personalization, a practitioner has to label a patient belonging to a particular class (syndrome) first. Hence, to detect the patterns between herbs and symptoms via syndrome is a challenging problem; finding these patterns can help prepare a prescription that contributes to the efficacy of a treatment. In order to highlight this unique triangular relationship of symptom, syndrome, and herb, we propose a novel three-step mining approach. It first starts with the construction of a heterogeneous tripartite information network, which carries richer information. The second step is to systematically extract path-based topological features from this tripartite network. Finally, an unsupervised method is used to learn the best parameters associated with different features in deciding the symptom-herb relationships. Experiments have been carried out on four real-world patient records (Insomnia, Diabetes, Infertility, and Tourette syndrome) with comprehensive measurements. Interesting and insightful experimental results are noted and discussed. |
format | Online Article Text |
id | pubmed-4475711 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-44757112015-07-12 Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph Chen, Jinpeng Poon, Josiah Poon, Simon K. Xu, Ling Sze, Daniel M. Y. Evid Based Complement Alternat Med Research Article Unlike the western medical approach where a drug is prescribed against specific symptoms of patients, traditional Chinese medicine (TCM) treatment has a unique step, which is called syndrome differentiation (SD). It is argued that SD is considered as patient classification because prior to the selection of the most appropriate formula from a set of relevant formulae for personalization, a practitioner has to label a patient belonging to a particular class (syndrome) first. Hence, to detect the patterns between herbs and symptoms via syndrome is a challenging problem; finding these patterns can help prepare a prescription that contributes to the efficacy of a treatment. In order to highlight this unique triangular relationship of symptom, syndrome, and herb, we propose a novel three-step mining approach. It first starts with the construction of a heterogeneous tripartite information network, which carries richer information. The second step is to systematically extract path-based topological features from this tripartite network. Finally, an unsupervised method is used to learn the best parameters associated with different features in deciding the symptom-herb relationships. Experiments have been carried out on four real-world patient records (Insomnia, Diabetes, Infertility, and Tourette syndrome) with comprehensive measurements. Interesting and insightful experimental results are noted and discussed. Hindawi Publishing Corporation 2015 2015-06-08 /pmc/articles/PMC4475711/ /pubmed/26167191 http://dx.doi.org/10.1155/2015/435085 Text en Copyright © 2015 Jinpeng Chen et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Chen, Jinpeng Poon, Josiah Poon, Simon K. Xu, Ling Sze, Daniel M. Y. Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph |
title | Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph |
title_full | Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph |
title_fullStr | Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph |
title_full_unstemmed | Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph |
title_short | Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph |
title_sort | mining symptom-herb patterns from patient records using tripartite graph |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4475711/ https://www.ncbi.nlm.nih.gov/pubmed/26167191 http://dx.doi.org/10.1155/2015/435085 |
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