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Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph

Unlike the western medical approach where a drug is prescribed against specific symptoms of patients, traditional Chinese medicine (TCM) treatment has a unique step, which is called syndrome differentiation (SD). It is argued that SD is considered as patient classification because prior to the selec...

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Autores principales: Chen, Jinpeng, Poon, Josiah, Poon, Simon K., Xu, Ling, Sze, Daniel M. Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4475711/
https://www.ncbi.nlm.nih.gov/pubmed/26167191
http://dx.doi.org/10.1155/2015/435085
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author Chen, Jinpeng
Poon, Josiah
Poon, Simon K.
Xu, Ling
Sze, Daniel M. Y.
author_facet Chen, Jinpeng
Poon, Josiah
Poon, Simon K.
Xu, Ling
Sze, Daniel M. Y.
author_sort Chen, Jinpeng
collection PubMed
description Unlike the western medical approach where a drug is prescribed against specific symptoms of patients, traditional Chinese medicine (TCM) treatment has a unique step, which is called syndrome differentiation (SD). It is argued that SD is considered as patient classification because prior to the selection of the most appropriate formula from a set of relevant formulae for personalization, a practitioner has to label a patient belonging to a particular class (syndrome) first. Hence, to detect the patterns between herbs and symptoms via syndrome is a challenging problem; finding these patterns can help prepare a prescription that contributes to the efficacy of a treatment. In order to highlight this unique triangular relationship of symptom, syndrome, and herb, we propose a novel three-step mining approach. It first starts with the construction of a heterogeneous tripartite information network, which carries richer information. The second step is to systematically extract path-based topological features from this tripartite network. Finally, an unsupervised method is used to learn the best parameters associated with different features in deciding the symptom-herb relationships. Experiments have been carried out on four real-world patient records (Insomnia, Diabetes, Infertility, and Tourette syndrome) with comprehensive measurements. Interesting and insightful experimental results are noted and discussed.
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spelling pubmed-44757112015-07-12 Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph Chen, Jinpeng Poon, Josiah Poon, Simon K. Xu, Ling Sze, Daniel M. Y. Evid Based Complement Alternat Med Research Article Unlike the western medical approach where a drug is prescribed against specific symptoms of patients, traditional Chinese medicine (TCM) treatment has a unique step, which is called syndrome differentiation (SD). It is argued that SD is considered as patient classification because prior to the selection of the most appropriate formula from a set of relevant formulae for personalization, a practitioner has to label a patient belonging to a particular class (syndrome) first. Hence, to detect the patterns between herbs and symptoms via syndrome is a challenging problem; finding these patterns can help prepare a prescription that contributes to the efficacy of a treatment. In order to highlight this unique triangular relationship of symptom, syndrome, and herb, we propose a novel three-step mining approach. It first starts with the construction of a heterogeneous tripartite information network, which carries richer information. The second step is to systematically extract path-based topological features from this tripartite network. Finally, an unsupervised method is used to learn the best parameters associated with different features in deciding the symptom-herb relationships. Experiments have been carried out on four real-world patient records (Insomnia, Diabetes, Infertility, and Tourette syndrome) with comprehensive measurements. Interesting and insightful experimental results are noted and discussed. Hindawi Publishing Corporation 2015 2015-06-08 /pmc/articles/PMC4475711/ /pubmed/26167191 http://dx.doi.org/10.1155/2015/435085 Text en Copyright © 2015 Jinpeng Chen et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Chen, Jinpeng
Poon, Josiah
Poon, Simon K.
Xu, Ling
Sze, Daniel M. Y.
Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph
title Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph
title_full Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph
title_fullStr Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph
title_full_unstemmed Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph
title_short Mining Symptom-Herb Patterns from Patient Records Using Tripartite Graph
title_sort mining symptom-herb patterns from patient records using tripartite graph
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4475711/
https://www.ncbi.nlm.nih.gov/pubmed/26167191
http://dx.doi.org/10.1155/2015/435085
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