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Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens

Low-contrast images, such as color microscopic images of unstained histological specimens, are composed of objects with highly correlated spectral profiles. Such images are very hard to segment. Here, we present a method that nonlinearly maps low-contrast color image into an image with an increased...

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Autores principales: Kopriva, Ivica, Popović Hadžija, Marijana, Hadžija, Mirko, Aralica, Gorana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477329/
https://www.ncbi.nlm.nih.gov/pubmed/26099963
http://dx.doi.org/10.1038/srep11576
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author Kopriva, Ivica
Popović Hadžija, Marijana
Hadžija, Mirko
Aralica, Gorana
author_facet Kopriva, Ivica
Popović Hadžija, Marijana
Hadžija, Mirko
Aralica, Gorana
author_sort Kopriva, Ivica
collection PubMed
description Low-contrast images, such as color microscopic images of unstained histological specimens, are composed of objects with highly correlated spectral profiles. Such images are very hard to segment. Here, we present a method that nonlinearly maps low-contrast color image into an image with an increased number of non-physical channels and a decreased correlation between spectral profiles. The method is a proof-of-concept validated on the unsupervised segmentation of color images of unstained specimens, in which case the tissue components appear colorless when viewed under the light microscope. Specimens of human hepatocellular carcinoma, human liver with metastasis from colon and gastric cancer and mouse fatty liver were used for validation. The average correlation between the spectral profiles of the tissue components was greater than 0.9985, and the worst case correlation was greater than 0.9997. The proposed method can potentially be applied to the segmentation of low-contrast multichannel images with high spatial resolution that arise in other imaging modalities.
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spelling pubmed-44773292015-07-13 Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens Kopriva, Ivica Popović Hadžija, Marijana Hadžija, Mirko Aralica, Gorana Sci Rep Article Low-contrast images, such as color microscopic images of unstained histological specimens, are composed of objects with highly correlated spectral profiles. Such images are very hard to segment. Here, we present a method that nonlinearly maps low-contrast color image into an image with an increased number of non-physical channels and a decreased correlation between spectral profiles. The method is a proof-of-concept validated on the unsupervised segmentation of color images of unstained specimens, in which case the tissue components appear colorless when viewed under the light microscope. Specimens of human hepatocellular carcinoma, human liver with metastasis from colon and gastric cancer and mouse fatty liver were used for validation. The average correlation between the spectral profiles of the tissue components was greater than 0.9985, and the worst case correlation was greater than 0.9997. The proposed method can potentially be applied to the segmentation of low-contrast multichannel images with high spatial resolution that arise in other imaging modalities. Nature Publishing Group 2015-06-23 /pmc/articles/PMC4477329/ /pubmed/26099963 http://dx.doi.org/10.1038/srep11576 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Kopriva, Ivica
Popović Hadžija, Marijana
Hadžija, Mirko
Aralica, Gorana
Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens
title Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens
title_full Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens
title_fullStr Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens
title_full_unstemmed Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens
title_short Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens
title_sort unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477329/
https://www.ncbi.nlm.nih.gov/pubmed/26099963
http://dx.doi.org/10.1038/srep11576
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