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Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens
Low-contrast images, such as color microscopic images of unstained histological specimens, are composed of objects with highly correlated spectral profiles. Such images are very hard to segment. Here, we present a method that nonlinearly maps low-contrast color image into an image with an increased...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477329/ https://www.ncbi.nlm.nih.gov/pubmed/26099963 http://dx.doi.org/10.1038/srep11576 |
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author | Kopriva, Ivica Popović Hadžija, Marijana Hadžija, Mirko Aralica, Gorana |
author_facet | Kopriva, Ivica Popović Hadžija, Marijana Hadžija, Mirko Aralica, Gorana |
author_sort | Kopriva, Ivica |
collection | PubMed |
description | Low-contrast images, such as color microscopic images of unstained histological specimens, are composed of objects with highly correlated spectral profiles. Such images are very hard to segment. Here, we present a method that nonlinearly maps low-contrast color image into an image with an increased number of non-physical channels and a decreased correlation between spectral profiles. The method is a proof-of-concept validated on the unsupervised segmentation of color images of unstained specimens, in which case the tissue components appear colorless when viewed under the light microscope. Specimens of human hepatocellular carcinoma, human liver with metastasis from colon and gastric cancer and mouse fatty liver were used for validation. The average correlation between the spectral profiles of the tissue components was greater than 0.9985, and the worst case correlation was greater than 0.9997. The proposed method can potentially be applied to the segmentation of low-contrast multichannel images with high spatial resolution that arise in other imaging modalities. |
format | Online Article Text |
id | pubmed-4477329 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-44773292015-07-13 Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens Kopriva, Ivica Popović Hadžija, Marijana Hadžija, Mirko Aralica, Gorana Sci Rep Article Low-contrast images, such as color microscopic images of unstained histological specimens, are composed of objects with highly correlated spectral profiles. Such images are very hard to segment. Here, we present a method that nonlinearly maps low-contrast color image into an image with an increased number of non-physical channels and a decreased correlation between spectral profiles. The method is a proof-of-concept validated on the unsupervised segmentation of color images of unstained specimens, in which case the tissue components appear colorless when viewed under the light microscope. Specimens of human hepatocellular carcinoma, human liver with metastasis from colon and gastric cancer and mouse fatty liver were used for validation. The average correlation between the spectral profiles of the tissue components was greater than 0.9985, and the worst case correlation was greater than 0.9997. The proposed method can potentially be applied to the segmentation of low-contrast multichannel images with high spatial resolution that arise in other imaging modalities. Nature Publishing Group 2015-06-23 /pmc/articles/PMC4477329/ /pubmed/26099963 http://dx.doi.org/10.1038/srep11576 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Kopriva, Ivica Popović Hadžija, Marijana Hadžija, Mirko Aralica, Gorana Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens |
title | Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens |
title_full | Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens |
title_fullStr | Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens |
title_full_unstemmed | Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens |
title_short | Unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens |
title_sort | unsupervised segmentation of low-contrast multichannel images: discrimination of tissue components in microscopic images of unstained specimens |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477329/ https://www.ncbi.nlm.nih.gov/pubmed/26099963 http://dx.doi.org/10.1038/srep11576 |
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