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Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo
Etheno DNA adducts are a prevalent type of DNA damage caused by vinyl chloride (VC) exposure and oxidative stress. Etheno adducts are mutagenic and may contribute to the initiation of several pathologies; thus, elucidating the pathways by which they induce cellular transformation is critical. Althou...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477646/ https://www.ncbi.nlm.nih.gov/pubmed/25837992 http://dx.doi.org/10.1093/nar/gkv243 |
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author | Chang, Shiou-chi Fedeles, Bogdan I. Wu, Jie Delaney, James C. Li, Deyu Zhao, Linlin Christov, Plamen P. Yau, Emily Singh, Vipender Jost, Marco Drennan, Catherine L. Marnett, Lawrence J. Rizzo, Carmelo J. Levine, Stuart S. Guengerich, F. Peter Essigmann, John M. |
author_facet | Chang, Shiou-chi Fedeles, Bogdan I. Wu, Jie Delaney, James C. Li, Deyu Zhao, Linlin Christov, Plamen P. Yau, Emily Singh, Vipender Jost, Marco Drennan, Catherine L. Marnett, Lawrence J. Rizzo, Carmelo J. Levine, Stuart S. Guengerich, F. Peter Essigmann, John M. |
author_sort | Chang, Shiou-chi |
collection | PubMed |
description | Etheno DNA adducts are a prevalent type of DNA damage caused by vinyl chloride (VC) exposure and oxidative stress. Etheno adducts are mutagenic and may contribute to the initiation of several pathologies; thus, elucidating the pathways by which they induce cellular transformation is critical. Although N(2),3-ethenoguanine (N(2),3-εG) is the most abundant etheno adduct, its biological consequences have not been well characterized in cells due to its labile glycosidic bond. Here, a stabilized 2′-fluoro-2′-deoxyribose analog of N(2),3-εG was used to quantify directly its genotoxicity and mutagenicity. A multiplex method involving next-generation sequencing enabled a large-scale in vivo analysis, in which both N(2),3-εG and its isomer 1,N(2)-ethenoguanine (1,N(2)-εG) were evaluated in various repair and replication backgrounds. We found that N(2),3-εG potently induces G to A transitions, the same mutation previously observed in VC-associated tumors. By contrast, 1,N(2)-εG induces various substitutions and frameshifts. We also found that N(2),3-εG is the only etheno lesion that cannot be repaired by AlkB, which partially explains its persistence. Both εG lesions are strong replication blocks and DinB, a translesion polymerase, facilitates the mutagenic bypass of both lesions. Collectively, our results indicate that N(2),3-εG is a biologically important lesion and may have a functional role in VC-induced or inflammation-driven carcinogenesis. |
format | Online Article Text |
id | pubmed-4477646 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-44776462015-06-29 Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo Chang, Shiou-chi Fedeles, Bogdan I. Wu, Jie Delaney, James C. Li, Deyu Zhao, Linlin Christov, Plamen P. Yau, Emily Singh, Vipender Jost, Marco Drennan, Catherine L. Marnett, Lawrence J. Rizzo, Carmelo J. Levine, Stuart S. Guengerich, F. Peter Essigmann, John M. Nucleic Acids Res Genome Integrity, Repair and Replication Etheno DNA adducts are a prevalent type of DNA damage caused by vinyl chloride (VC) exposure and oxidative stress. Etheno adducts are mutagenic and may contribute to the initiation of several pathologies; thus, elucidating the pathways by which they induce cellular transformation is critical. Although N(2),3-ethenoguanine (N(2),3-εG) is the most abundant etheno adduct, its biological consequences have not been well characterized in cells due to its labile glycosidic bond. Here, a stabilized 2′-fluoro-2′-deoxyribose analog of N(2),3-εG was used to quantify directly its genotoxicity and mutagenicity. A multiplex method involving next-generation sequencing enabled a large-scale in vivo analysis, in which both N(2),3-εG and its isomer 1,N(2)-ethenoguanine (1,N(2)-εG) were evaluated in various repair and replication backgrounds. We found that N(2),3-εG potently induces G to A transitions, the same mutation previously observed in VC-associated tumors. By contrast, 1,N(2)-εG induces various substitutions and frameshifts. We also found that N(2),3-εG is the only etheno lesion that cannot be repaired by AlkB, which partially explains its persistence. Both εG lesions are strong replication blocks and DinB, a translesion polymerase, facilitates the mutagenic bypass of both lesions. Collectively, our results indicate that N(2),3-εG is a biologically important lesion and may have a functional role in VC-induced or inflammation-driven carcinogenesis. Oxford University Press 2015-06-23 2015-04-02 /pmc/articles/PMC4477646/ /pubmed/25837992 http://dx.doi.org/10.1093/nar/gkv243 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genome Integrity, Repair and Replication Chang, Shiou-chi Fedeles, Bogdan I. Wu, Jie Delaney, James C. Li, Deyu Zhao, Linlin Christov, Plamen P. Yau, Emily Singh, Vipender Jost, Marco Drennan, Catherine L. Marnett, Lawrence J. Rizzo, Carmelo J. Levine, Stuart S. Guengerich, F. Peter Essigmann, John M. Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo |
title | Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo |
title_full | Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo |
title_fullStr | Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo |
title_full_unstemmed | Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo |
title_short | Next-generation sequencing reveals the biological significance of the N(2),3-ethenoguanine lesion in vivo |
title_sort | next-generation sequencing reveals the biological significance of the n(2),3-ethenoguanine lesion in vivo |
topic | Genome Integrity, Repair and Replication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4477646/ https://www.ncbi.nlm.nih.gov/pubmed/25837992 http://dx.doi.org/10.1093/nar/gkv243 |
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