Cargando…

A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data

We summarise various ways of performing dimensionality reduction on high-dimensional microarray data. Many different feature selection and feature extraction methods exist and they are being widely used. All these methods aim to remove redundant and irrelevant features so that classification of new...

Descripción completa

Detalles Bibliográficos
Autores principales: Hira, Zena M., Gillies, Duncan F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4480804/
https://www.ncbi.nlm.nih.gov/pubmed/26170834
http://dx.doi.org/10.1155/2015/198363
_version_ 1782378192945807360
author Hira, Zena M.
Gillies, Duncan F.
author_facet Hira, Zena M.
Gillies, Duncan F.
author_sort Hira, Zena M.
collection PubMed
description We summarise various ways of performing dimensionality reduction on high-dimensional microarray data. Many different feature selection and feature extraction methods exist and they are being widely used. All these methods aim to remove redundant and irrelevant features so that classification of new instances will be more accurate. A popular source of data is microarrays, a biological platform for gathering gene expressions. Analysing microarrays can be difficult due to the size of the data they provide. In addition the complicated relations among the different genes make analysis more difficult and removing excess features can improve the quality of the results. We present some of the most popular methods for selecting significant features and provide a comparison between them. Their advantages and disadvantages are outlined in order to provide a clearer idea of when to use each one of them for saving computational time and resources.
format Online
Article
Text
id pubmed-4480804
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Hindawi Publishing Corporation
record_format MEDLINE/PubMed
spelling pubmed-44808042015-07-13 A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data Hira, Zena M. Gillies, Duncan F. Adv Bioinformatics Review Article We summarise various ways of performing dimensionality reduction on high-dimensional microarray data. Many different feature selection and feature extraction methods exist and they are being widely used. All these methods aim to remove redundant and irrelevant features so that classification of new instances will be more accurate. A popular source of data is microarrays, a biological platform for gathering gene expressions. Analysing microarrays can be difficult due to the size of the data they provide. In addition the complicated relations among the different genes make analysis more difficult and removing excess features can improve the quality of the results. We present some of the most popular methods for selecting significant features and provide a comparison between them. Their advantages and disadvantages are outlined in order to provide a clearer idea of when to use each one of them for saving computational time and resources. Hindawi Publishing Corporation 2015 2015-06-11 /pmc/articles/PMC4480804/ /pubmed/26170834 http://dx.doi.org/10.1155/2015/198363 Text en Copyright © 2015 Z. M. Hira and D. F. Gillies. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review Article
Hira, Zena M.
Gillies, Duncan F.
A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data
title A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data
title_full A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data
title_fullStr A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data
title_full_unstemmed A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data
title_short A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data
title_sort review of feature selection and feature extraction methods applied on microarray data
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4480804/
https://www.ncbi.nlm.nih.gov/pubmed/26170834
http://dx.doi.org/10.1155/2015/198363
work_keys_str_mv AT hirazenam areviewoffeatureselectionandfeatureextractionmethodsappliedonmicroarraydata
AT gilliesduncanf areviewoffeatureselectionandfeatureextractionmethodsappliedonmicroarraydata
AT hirazenam reviewoffeatureselectionandfeatureextractionmethodsappliedonmicroarraydata
AT gilliesduncanf reviewoffeatureselectionandfeatureextractionmethodsappliedonmicroarraydata